DEar All,
Here is out put from Python console after runing teh suggested Python code 
script.

>>> import os
>>> print os.path.realpath(os.getcwd())
C:\Python27
>>> print os.path.realpath(os.environ['SLEPC_DIR'])
D:\TEST_FOLDER_dell\slepc
>>>
Interesting thing here is, why Python script returns the
backslashed path although I'm sure that I set it in?
environmental ?variables as forward slashed path.?



And here is the output from the CygWin terminal?

nobody at nobody /cygdrive/d/TEST_FOLDER_dell/slepc
$ export SKPEC_DIR=D:/TEST_FOLDER_dell/slepc/

nobody at nobody /cygdrive/d/TEST_FOLDER_dell/slepc
$ ./configure
Checking environment...
cygwin warning:
? MS-DOS style path detected: D:/TEST_FOLDER_dell/slepc
? Preferred POSIX equivalent is: /cygdrive/d/TEST_FOLDER_dell/slepc
? CYGWIN environment variable option "nodosfilewarning" turns off this warning.
? Consult the user's guide for more details about POSIX paths:
? ? http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
ERROR: SLEPC_DIR is not the current directory


Your help will be appreciated,                                    

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