Hi Satish,
I think something for handling the libz problem must be missing. I just
tried configuring on Intrepid with the configure script appended to this
email and I get the same problem:
Compression library [libz.a or equivalent] not found
I believe that the library that I need is present on the system:
[email protected]:~/proj/petsc> ls -l /soft/apps/zlib-1.2.3/lib/
total 128
-rwxrwxr-x 1 rloy software 108724 2010-04-21 01:35 libz.a
Any ideas on what I need to do to get configure.py to find and use this?
Thanks,
Richard
#!/usr/bin/python
if __name__ == '__main__':
import sys
import os
sys.path.insert(0, os.path.abspath('config'))
import configure
configure_options = [
'--with-hdf5-dir=/soft/apps/current/hdf5-1.8.9',
'--download-cmake=1',
'--download-metis=1',
'--download-parmetis=1',
'--known-bits-per-byte=8',
'--known-level1-dcache-assoc=0',
'--known-level1-dcache-linesize=32',
'--known-level1-dcache-size=32768',
'--known-memcmp-ok=1',
'--known-mpi-long-double=1',
'--known-mpi-shared-libraries=0',
'--known-sizeof-MPI_Comm=4',
'--known-sizeof-MPI_Fint=4',
'--known-sizeof-char=1',
'--known-sizeof-double=8',
'--known-sizeof-float=4',
'--known-sizeof-int=4',
'--known-sizeof-long-long=8',
'--known-sizeof-long=4',
'--known-sizeof-short=2',
'--known-sizeof-size_t=4',
'--known-sizeof-void-p=4',
'--prefix=/soft/apps/libraries/petsc/3.3-p2/xl-opt',
'--with-batch=1',
#'--with-blacs-include=/soft/apps/libraries/alcf/current/xl/SCALAPACK/',
#'--with-blacs-lib=/soft/apps/libraries/alcf/current/xl/SCALAPACK/lib/libscalapack.a',
'--with-blas-lapack-lib=-L/soft/apps/libraries/alcf/current/xl/LAPACK/lib
-llapack -L/soft/apps/libraries/alcf/current/xl/BLAS/lib -lblas',
'--with-cc=mpixlc_r',
'--with-cxx=mpixlcxx_r',
'--with-debugging=0',
'--with-fc=mpixlf77_r -qnosave',
'--with-fortran-kernels=1',
'--with-is-color-value-type=short',
'--with-scalapack-include=/soft/apps/libraries/alcf/current/xl/SCALAPACK/',
'--with-scalapack-lib=/soft/apps/libraries/alcf/current/xl/SCALAPACK/lib/libscalapack.a',
'--with-shared-libraries=0',
'--with-x=0',
'--with-debugging=1',
'-COPTFLAGS=-g',
'-CXXOPTFLAGS=-g',
'-FOPTFLAGS=-g',
]
configure.petsc_configure(configure_options)
On 7/16/13 12:59 PM, Satish Balay wrote:
--download-package might not work on all machines. --download-hdf5=1 does
not work on bg/p
However there is hdf5 installed on it. You can try using
--with-hdf5-include/--with-hdf5-lib options.
There could still be an issue with "Compression library [libz.a or
equivalent] not found" but I think the workarround is already in
petsc-dev.
Satish
On Tue, 16 Jul 2013, Jitendra Kumar wrote:
Thanks Satish. I tried using the configuration you pointed me to with the
addition of --download-hdf5=1 and got error "Compression library [libz.a or
equivalent] not found
"
Do I need to load some package to get this?
Jitu
On Tue, Jul 16, 2013 at 11:59 AM, Satish Balay <[email protected]> wrote:
As the message indicates you need '--with-batch' option on this machine
Check one of the default builds on intrepid for configure options to use..
[perhaps
/soft/apps/libraries/petsc/3.3-p6/xl-opt/conf/reconfigure-arch-bgp-ibm-opt.py]
Satish
On Tue, 16 Jul 2013, Jitendra Kumar wrote:
I ran into following errors while trying to build PETSc-dev on Intrepid
@ALCF. (configure.log attached)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
-------------------------------------------------------------------------------
Cannot run executable to determine size of char. If this machine uses a
batch system
to submit jobs you will need to configure using ./configure with the
additional option --with-batch.
Otherwise there is problem with the compilers. Can you compile and run
code with your C/C++ (and maybe Fortran) compilers?
*******************************************************************************
File "/gpfs/home/jkumar/lib/petsc/config/configure.py", line 293, in
petsc_configure
framework.configure(out = sys.stdout)
File
"/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/framework.py",
line
933, in configure
child.configure()
File "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
line 386, in configure
map(lambda type: self.executeTest(self.checkSizeof, type),
['char','void *', 'short', 'int', 'long', 'long long', 'float', 'double',
'size_t'])
File "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
line 386, in <lambda>
map(lambda type: self.executeTest(self.checkSizeof, type),
['char','void *', 'short', 'int', 'long', 'long long', 'float', 'double',
'size_t'])
File "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/base.py",
line 115, in executeTest
ret = apply(test, args,kargs)
File "/gpfs/home/jkumar/lib/petsc/config/BuildSystem/config/types.py",
line 296, in checkSizeof
raise RuntimeError(msg)
This is what my configuration looks like (adapted from
config/examples/arch-bgp-ibm-opt.py)
configure_options = [
'--with-cc=mpixlc',
'--with-fc=mpixlf90',
'--with-cxx=mpixlcxx',
'COPTFLAGS=-O3',
'FOPTFLAGS=-O3',
'--with-debugging=0',
'--with-cmake=/soft/apps/fen/cmake-2.8.3/bin/cmake',
# '--with-hdf5=/soft/apps/hdf5-1.8.0',
'--download-parmetis=1',
'--download-metis=1',
'--download-plapack=1',
'--download-hdf5=1'
]
I would appreciate any help building the llbrary there.
Thanks,
Jitu
--
Richard Tran Mills, Ph.D.
Computational Earth Scientist | Joint Assistant Professor
Hydrogeochemical Dynamics Team | EECS and Earth & Planetary Sciences
Oak Ridge National Laboratory | University of Tennessee, Knoxville
E-mail: [email protected] V: 865-241-3198 http://climate.ornl.gov/~rmills
