Leave it to run for several hours it could be that gcc-4.9 is just taking a very long time on mpich.
Barry On Apr 24, 2014, at 8:35 PM, Matthew Knepley <[email protected]> wrote: > On Thu, Apr 24, 2014 at 9:27 PM, Justin Dong <[email protected]> wrote: > Hi all, > > I'm trying to configure PETSc on Mac OS X with gcc-4.9. Currently, it's > configured with gcc that comes with Xcode, but I want to use gcc-4.9 that I > installed myself. I try: > > > ./configure --with-cc=gcc-4.9 --with-fc=gfortran --download-f-blas-lapack > --download-mpich > > > > But while configuring MPICH it gets stuck indefinitely. I've included the > output below after I terminate the process. I don't have this issue if I just > configure with cc=gcc. Any ideas what the problem is here? > > From the stack trace, its just taking a long time. If it overruns the > timeout, it should just die. You can try > running using -useThreads=0 if you suspect the timeout is not working. > > Matt > > ^CTraceback (most recent call last): > > File "./configure", line 10, in <module> > > execfile(os.path.join(os.path.dirname(__file__), 'config', > 'configure.py')) > > File "./config/configure.py", line 372, in <module> > > petsc_configure([]) > > File "./config/configure.py", line 287, in petsc_configure > > framework.configure(out = sys.stdout) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/framework.py", > line 933, in configure > > child.configure() > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py", > line 558, in configure > > self.executeTest(self.configureLibrary) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/base.py", > line 115, in executeTest > > ret = apply(test, args,kargs) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py", > line 748, in configureLibrary > > config.package.Package.configureLibrary(self) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py", > line 486, in configureLibrary > > for location, directory, lib, incl in self.generateGuesses(): > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py", > line 232, in generateGuesses > > d = self.checkDownload(1) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py", > line 351, in checkDownload > > return config.package.Package.checkDownload(self, requireDownload) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py", > line 340, in checkDownload > > return self.getInstallDir() > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/package.py", > line 187, in getInstallDir > > return os.path.abspath(self.Install()) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py", > line 366, in Install > > return self.InstallMPICH() > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/config/packages/MPI.py", > line 544, in InstallMPICH > > output,err,ret = config.base.Configure.executeShellCommand('cd > '+mpichDir+' && ./configure '+args, timeout=2000, log = self.framework.log) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/script.py", > line 254, in executeShellCommand > > (output, error, status) = runInShell(command, log, cwd) > > File > "/Users/justindong/Classes/CAAMResearch/petsc-3.4.4/config/BuildSystem/script.py", > line 243, in runInShell > > thread.join(timeout) > > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py", > line 958, in join > > self.__block.wait(delay) > > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py", > line 358, in wait > > _sleep(delay) > > > KeyboardInterrupt > > > > > > Sincerely, > > Justin > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener
