Hi Andrew,

> Doing a basic cantilever bending problem to test my code which results
in the linear system Au = b.

  - Using DMDA for the domain and KSPSetComputeOperators
  - Solving it using various methods in petsc gets similar (within 1%)
solutions
  - Even using -pc_type lu
  - Using KSPGetOperators and KSPGetRhs to export to matlab

Exporting the matrix and and the rhs, importing them into matlab  and
solving with backslash gives a solution which matches the
Euler-Bernoulli beam model much closer (0.4% error vs 9.6%).

Calculating the residual of petsc's solution using matlab
(norm(A*u-b)/norm(b)) I get 0.3 having solved with -pc_type lu.

Is there a way I could have accidentally made petsc solve a different
problem to Ax=b? I've been looking at this code for a while now (days)
and can't seem to figure out what is wrong.

one possible cause: How many digits to you export per floating point value? If you only export a small number of significant digits (~4) and your system doesn't have a very good condition number, then this is the effect of truncation errors.

Best regards,
Karli

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