I did what Barry suggested: deleting the directory and all. And it works fine now. Thanks all
On Mon, Aug 11, 2014 at 5:56 PM, Satish Balay <[email protected]> wrote: > Hm - a bunch of sourcefiles are not getting compiled. I'm not sure why. > > can you try the following - and see if the problem goes away? > > make allclean all > > If not - try: > > make allclean all-cmake > > Satish > > On Mon, 11 Aug 2014, Justin Chang wrote: > > > Attached are the configure.log and make.log files > > > > Thanks, > > Justin > > > > > > On Mon, Aug 11, 2014 at 5:36 PM, Barry Smith <[email protected]> wrote: > > > > > > > > Send configure.log and make.log > > > > > > Delete the entire PETSc directory and trying again without the > > > --download-f2cblaslapack but with —with-fc=gfortran (not f2c) I > suspect > > > you made multiple attempts to install and some undesirable files got in > > > place that are causing the difficultly. > > > > > > If the clean install does not work then Send configure.log and > make.log > > > > > > Barry > > > > > > On Aug 11, 2014, at 5:31 PM, Justin Chang <[email protected]> wrote: > > > > > > > Hi all, > > > > > > > > I am trying to install petsc-3.5.1 onto my school's iMac (version > > > 10.9.2) and I have run configure with the following options: > > > > > > > > ./configure --with-cc=gcc --with-cxx=g++ --with-f2c=gfortran > > > --download-f2cblaslapack--download-mpich --with-debugging=1 > > > --download-ctetgen --download-triangle --with-valgrind=1 > -with-cmake=cmake > > > --download-metis --download-parmetis --download-netcdf --download-hdf5 > > > --download-exodusii > > > > > > > > Then when I run 'make all test' I get the following errors: > > > > > > > > Undefined symbols for architecture x86_64: > > > > "_MatPartitioningCreate_Parmetis", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PETSC_VIEWER_HDF5_", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerCreate_HDF5", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5GetFileId", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5GetGroup", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5GetTimestep", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5HasAttribute", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5PopGroup", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5PushGroup", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5ReadAttribute", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5SetTimestep", referenced from: > > > > import-atom in libpetsc.dylib > > > > "_PetscViewerHDF5WriteAttribute", referenced from: > > > > import-atom in libpetsc.dylib > > > > ld: symbol(s) not found for architecture x86_64 > > > > clang: error: linker command failed with exit code 1 (use -v to see > > > invocation) > > > > make[3]: [ex19] Error 1 (ignored) > > > > /bin/rm -f ex19.o > > > > > > > > Any help appreciated, thanks > > > > > > > > Justin > > > > > > > > >
