Am 01.09.2014 15:44, schrieb Florian Lindner:
Am 01.09.2014 12:45, schrieb Matthew Knepley:
On Mon, Sep 1, 2014 at 4:10 AM, Florian Lindner <mailingli...@xgm.de>
wrote:
Hello,
I want to set the entire column of a N x M matrix to a N vector. What
is
the best way to do that?
My first guess would be to VecGetArray and use that array for
MatSetValuesLocal with nrow = VecGetLocalSize. What is the best to
say
MatSetValuesLocal that I want to set all rows continuesly (same like
passing irow = [0, 1, ..., VecGetLocalSize-1]?
Any better way?
You are assuming dense storage above, so you can use
http://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MatDenseGetArray.html+
How can you tell that I'm assuming dense storage. My matrix is
actually dense, but I try to write my code as generic as possible
(being a very petsc newbie). I have that code which crashes at the
moment:
void set_column_vector(Vector v, int col)
{
PetscErrorCode ierr = 0;
const PetscScalar *vec;
PetscInt size, mat_rows, mat_cols;
VecGetLocalSize(v.vector, &size);
cout << "Vector Size = " << size << endl;
MatGetSize(matrix, &mat_rows, &mat_cols);
cout << "Matrix Rows = " << mat_rows << " Columns = " <<
mat_cols << endl;
PetscInt irow[size];
for (int i = 0; i < size; i++) {
irow[i] = i;
}
ierr = VecGetArrayRead(v.vector, &vec); CHKERRV(ierr);
ierr = MatSetValuesLocal(matrix, size-1, irow, 1, &col, vec,
INSERT_VALUES); CHKERRV(ierr);
Correction:
ierr = MatSetValuesLocal(matrix, size, irow, 1, &col, vec,
INSERT_VALUES);
size-1 was just one of my debugging experiments.
ierr = VecRestoreArrayRead(v.vector, &vec); CHKERRV(ierr);
ierr = MatAssemblyBegin(matrix, MAT_FINAL_ASSEMBLY);
CHKERRV(ierr);
ierr = MatAssemblyEnd(matrix, MAT_FINAL_ASSEMBLY); CHKERRV(ierr);
}
v.vector is a Vec, matrix is a Mat. col = 1. It's compiled with
mpic++, but started without, just ./a.out. Output is:
Vector Size = 20
Matrix Rows = 20 Columns = 5
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or
-on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: --------------------- Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not
available,
[0]PETSC ERROR: INSTEAD the line number of the start of the
function
[0]PETSC ERROR: is given.
[0]PETSC ERROR: [0] MatSetValuesLocal line 1950
/home/florian/software/petsc/src/mat/interface/matrix.c
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Signal received
[0]PETSC ERROR: See
http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble
shooting.
[0]PETSC ERROR: Petsc Release Version 3.5.1, unknown
[0]PETSC ERROR: ./a.out on a arch-linux2-c-debug named asaru by
florian Mon Sep 1 15:37:32 2014
[0]PETSC ERROR: Configure options --with-c2html=0
[0]PETSC ERROR: #1 User provided function() line 0 in unknown file
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 59.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
Any idea what the problem is?
Thanks!
Florian
