On Tue, Nov 18, 2014 at 1:49 PM, Dave May <[email protected]> wrote:
> Hi, > > I was trying to use some of DT functionality (in particular > PetscDTGaussTensorQuadrature()) in petsc 3.5.2 and I encountered this error: > I did not anticipate someone calling that before anything by itself. You need a call to DMInitializePackage() This is called by PetscQuadratureCreate(). Matt > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Invalid argument > [0]PETSC ERROR: Invalid object classid 0 > This could happen if you compile with PETSC_HAVE_DYNAMIC_LIBRARIES, but > link with static libraries. > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > for trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.5.2, Sep, 08, 2014 > [0]PETSC ERROR: ./dmdadg.app on a arch-darwin-c-mpi-debug-f2c named > nikkan.local by dmay Tue Nov 18 20:34:56 2014 > [0]PETSC ERROR: Configure options --download-openmpi=yes > --with-debugging=yes --with-fc=0 --download-f2cblaslapck=yes > PETSC_ARCH=arch-darwin-c-mpi-debug-f2c > [0]PETSC ERROR: #1 PetscClassRegLogGetClass() line 290 in > /Users/dmay/software/petsc-3.5.2/src/sys/logging/utils/classlog.c > [0]PETSC ERROR: #2 PetscLogObjCreateDefault() line 317 in > /Users/dmay/software/petsc-3.5.2/src/sys/logging/utils/classlog.c > [0]PETSC ERROR: #3 PetscQuadratureCreate() line 35 in > /Users/dmay/software/petsc-3.5.2/src/dm/dt/interface/dt.c > [0]PETSC ERROR: #4 PetscDTGaussTensorQuadrature() line 322 in > /Users/dmay/software/petsc-3.5.2/src/dm/dt/interface/dt.c > [0]PETSC ERROR: #5 DMDGSpace_ex4_quadrature() line 480 in dmdadg.c > [0]PETSC ERROR: #6 main() line 503 in dmdadg.c > [0]PETSC ERROR: ----------------End of Error Message -------send entire > error message to [email protected] > -------------------------------------------------------------------------- > MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD > with errorcode 1. > > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > You may or may not see output from other processes, depending on > exactly when Open MPI kills them. > -------------------------------------------------------------------------- > > Snooping around in the source tree, the only place where I can find > PetscHeaderCreate being passed PETSC_OBJECT_CLASSID is within > src/dm/dt/interface/dt.c in the function PetscQuadratureCreate(). > > Is this is a bug or is my petsc build broken?? > > I'm sure I am linking against a dynamic library (or whatever you want to > call a dylib on OSX) > > dmay@nikkan:~/codes/dgspace$ otool -L dmdadg.app > dmdadg.app: > * > /Users/dmay/software/petsc-3.5.2/arch-darwin-c-mpi-debug-f2c/lib/libpetsc.3.5.dylib > (compatibility version 3.5.0, current version 3.5.2)* > > /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib > (compatibility version 1.0.0, current version 1.0.0) > > /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib > (compatibility version 1.0.0, current version 1.0.0) > /opt/X11/lib/libX11.6.dylib (compatibility version 10.0.0, current > version 10.0.0) > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current > version 1197.1.1) > /usr/lib/libssl.0.9.8.dylib (compatibility version 0.9.8, current > version 50.0.0) > /usr/lib/libcrypto.0.9.8.dylib (compatibility version 0.9.8, current > version 50.0.0) > > /Users/dmay/software/petsc-3.5.2/arch-darwin-c-mpi-debug-f2c/lib/libmpi_cxx.1.dylib > (compatibility version 3.0.0, current version 3.3.0) > /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version > 120.0.0) > > /Users/dmay/software/petsc-3.5.2/arch-darwin-c-mpi-debug-f2c/lib/libmpi.1.dylib > (compatibility version 7.0.0, current version 7.0.0) > > > > Cheers, > Dave > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener
