Humm, I cleaned everything, and even cut and pasted your configure line, same thing. I am now trying with a fresh petsc clone.
I add these modules: module load adios/1.6.0 module load cray-hdf5-parallel module load cmake/2.8.11.2 module unload darshan and I do not see this bfort-base.txt file: 10:03 edison03 master ~/petsc_install/petsc$ ll arch-xc30-opt64-intel/share total 32 -rw-r--r-- 1 madams madams 4755 May 29 09:52 basedefs.txt -rw-r--r-- 1 madams madams 326 May 29 09:52 blueball.gif drwxr-x--- 2 madams madams 512 May 29 09:52 doctext -rw-r--r-- 1 madams madams 326 May 29 09:52 greenball.gif -rw-r--r-- 1 madams madams 1625 May 29 09:52 html.def -rw-r--r-- 1 madams madams 1668 May 29 09:52 latex.def drwxr-x--- 3 madams madams 512 May 29 09:52 man -rw-r--r-- 1 madams madams 79 May 29 09:52 next.gif -rw-r--r-- 1 madams madams 287 May 29 09:52 next.xbm -rw-r--r-- 1 madams madams 1482 May 29 09:52 nroff.def -rw-r--r-- 1 madams madams 79 May 29 09:52 previous.gif -rw-r--r-- 1 madams madams 299 May 29 09:52 previous.xbm -rw-r--r-- 1 madams madams 7353 May 29 09:52 pstoppm.ps -rw-r--r-- 1 madams madams 326 May 29 09:52 purpleball.gif -rw-r--r-- 1 madams madams 326 May 29 09:52 redball.gif -rw-r--r-- 1 madams madams 283 May 29 09:52 refman.def -rw-r--r-- 1 madams madams 3151 May 29 09:52 refman.sty -rw-r--r-- 1 madams madams 74 May 29 09:52 up.gif -rw-r--r-- 1 madams madams 281 May 29 09:52 up.xbm -rw-r--r-- 1 madams madams 324 May 29 09:52 yellowball.gif On Fri, May 29, 2015 at 11:23 AM, Satish Balay <[email protected]> wrote: > I tried building on edison - and can't reproduce this problem. > > ./configure --COPTFLAGS="-fast -no-ipo" --CXXOPTFLAGS="-fast -no-ipo" > --FOPTFLAGS="-fast -no-ipo" --with-ssl=0 --with-cc=cc > --with-clib-autodetect=0 --with-cxx=CC --with-cxxlib-autodetect=0 > --with-debugging=0 --with-fc=ftn --with-fortranlib-autodetect=0 > --with-shared-libraries=0 --with-x=0 --with-mpiexec=aprun LIBS=-lstdc++ > --with-64-bit-indices PETSC_DIR=$PWD PETSC_ARCH=arch-xc30-opt64-intel > --prefix=$HOME/soft/test > > The error message you get is puzzling.. > > > Unable to find bfort-base.txt config file in > /global/homes/m/madams/petsc_install/petsc/arch-xc30-opt64-intel/share******* > > Can you attempt a build from a 'clean' repo? > > rm -rf arch* > git clean -f -d -x > ./configure.... > > Satish > > > On Fri, 29 May 2015, Mark Adams wrote: > > > Barry, It looks like you blew it. > > > > On Wed, May 27, 2015 at 4:03 PM, Barry Smith <[email protected]> wrote: > > > > > > > > Apparently all people with access to the PETSc repository (i.e. > > > everyone in the world with internet access) have caught a rare disease > that > > > has caused their fingers to fall off, making them incapable of fixing > this. > > > > > > I have added all the PETSc enums to this file in master and next. > Make > > > sure you run make allfortranstubs to regenerate the stubs. > > > > > > Barry > > > > > > > > > > > > > On May 27, 2015, at 2:15 PM, Mark Adams <[email protected]> wrote: > > > > > > > > FYI, this does not seem to be fixed. > > > > > > > > On Sat, Apr 18, 2015 at 5:49 AM, Barry Smith <[email protected]> > wrote: > > > > > > > > Looks like a bunch of these things are missing from > > > lib/petsc/conf/bfort-petsc.txt it should be listed under native > > > > > > > > Barry > > > > > > > > > > > > > > > > > On Apr 17, 2015, at 4:43 PM, Matthew Knepley <[email protected]> > > > wrote: > > > > > > > > > > Does bfort have to be told that PCCompositeType is an enum? > > > > > > > > > > Matt "bfort's biggest fan" > > > > > > > > > > On Fri, Apr 17, 2015 at 4:37 PM, Mark Adams <[email protected]> > wrote: > > > > > It looks like fieldsplitf.c has an extra PetscToPointer. type is > > > already a pointer: > > > > > > > > > > PETSC_EXTERN void PETSC_STDCALL pcfieldsplitgettype_(PC > > > pc,PCCompositeType *type, int *__ierr ){ > > > > > *__ierr = PCFieldSplitGetType( > > > > > (PC)PetscToPointer((pc) ), > > > > > (PCCompositeType* )PetscToPointer((type) )); > > > > > } > > > > > > > > > > On Fri, Apr 17, 2015 at 4:12 PM, Barry Smith <[email protected]> > > > wrote: > > > > > > > > > > Likely need to run in the debugger to see what generates the > error. > > > Perhaps a missing ierr? > > > > > > > > > > Barry > > > > > > > > > > > > > > > > On Apr 17, 2015, at 9:10 AM, Mark Adams <[email protected]> wrote: > > > > > > > > > > > > I declare > > > > > > > > > > > > PCCompositeType::pcctype > > > > > > > > > > > > But PCFieldSplitGetType does not seem to like it? > > > > > > > > > > > > Mark > > > > > > > > > > > > [1]PETSC ERROR: --------------------- Error Message > > > -------------------------------------------------------------- > > > > > > [1]PETSC ERROR: Invalid pointer > > > > > > [1]PETSC ERROR: Invalid Pointer to Int: Parameter # 2 > > > > > > [1]PETSC ERROR: See > > > http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble > shooting. > > > > > > [1]PETSC ERROR: Petsc Development GIT revision: > > > v3.5.3-2702-g1f714da GIT Date: 2015-04-16 11:32:06 -0500 > > > > > > [1]PETSC ERROR: ../../XGC1_3/xgc-em on a arch-macosx-gnu-g named > > > MacBook-Pro.local by markadams Fri Apr 17 10:06:09 2015 > > > > > > [1]PETSC ERROR: Configure options --download-hypre=1 > > > --download-p4est --download-superlu=1 --download-mumps > --download-scalapack > > > --download-superlu_dist=1 --download-parmetis=1 --download-metis=1 > > > --download-triangle=1 --with-hdf5-dir=/Users/markadams/Codes/hdf5 > > > --with-x=0 --with-debugging=1 PETSC_ARCH=arch-macosx-gnu-g > > > > > > [1]PETSC ERROR: #1 PCFieldSplitGetType() line 2046 in > > > /Users/markadams/Codes/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -- > > > > > What most experimenters take for granted before they begin their > > > experiments is infinitely more interesting than any results to which > their > > > experiments lead. > > > > > -- Norbert Wiener > > > > > > > > > > > > > > > > > >
