This would be great.
Thank you,
Michael.
On 06/29/2015 11:13 AM, Matthew Knepley wrote:
On Mon, Jun 29, 2015 at 10:12 AM, Michael Povolotskyi
<[email protected] <mailto:[email protected]>> wrote:
Thank you, I can try with a newer release.
Have you re-implemented the function there?
The problem is we have not move to the new API completely.
Is there any workaround with Petsc 3.4?
I think there was a bugfix here, but I would have to confirm in the
logs. If it works, we could try and backport
the solution since the interface did not change.
Thanks,
Matt
On 06/29/2015 11:08 AM, Matthew Knepley wrote:
On Mon, Jun 29, 2015 at 9:59 AM, Michael Povolotskyi
<[email protected] <mailto:[email protected]>> wrote:
Dear PETSc developers and users,
what does this error message mean?
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Argument out of range!
[0]PETSC ERROR: nnz cannot be greater than row length: local
row 0 value 108 rowlength 72!
It looks like a bug in our AXPY implementation. We try to do
preallocation of the result, but it seems
here that we are overallocating. Can you run with the latest release?
Thanks,
Matt
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble
shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: /home/mpovolot/NEMO5/prototype/nemo on a
linux-static named conte-fe02.rcac.purdue.edu
<http://conte-fe02.rcac.purdue.edu> by mpovolot Mon Jun 29
10:49:32 2015
[0]PETSC ERROR: Libraries linked from
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/linux-static/lib
[0]PETSC ERROR: Configure run at Sun Jan 19 12:47:22 2014
[0]PETSC ERROR: Configure options --with-cc=mpiicc
--with-cxx=mpiicpc --with-fc=mpiifort --download-sowing
--with-scalar-type=complex --with-shared-libraries=0
--with-pic=1 --with-clanguage=C++ --with-fortran=1
--with-fortran-kernels=0 --with-debugging=0
--with-blas-lapack-dir=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
--with-blacs-lib=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
--with-blacs-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
--with-scalapack-lib="-L/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
-lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64"
--with-scalapack-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
--COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3
--download-hdf5=yes --download-metis=yes
--download-parmetis=yes --download-superlu_dist=yes
--download-mumps=yes --download-hypre=no --download-spooles=yes
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: MatSeqAIJSetPreallocation_SeqAIJ() line 3524
in
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
[0]PETSC ERROR: MatSeqAIJSetPreallocation() line 3496 in
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
[0]PETSC ERROR: MatAXPY_SeqAIJ() line 2710 in
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
[0]PETSC ERROR: MatAXPY() line 39 in
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/utils/axpy.c
terminate called after throwing an instance of 'n5_runtime_error'
what(): [PetscMatrixNemo<cplx>] PETSc gave error with code 63:
Argument out of range
.
Program received signal SIGABRT, Aborted.
Thank you,
Michael.
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to
which their experiments lead.
-- Norbert Wiener
--
Michael Povolotskyi, PhD
Research Assistant Professor
Network for Computational Nanotechnology
Hall for Discover and Learning Research, Room 441
West Lafayette, IN 47907
Phone(765) 4949396 <tel:%28765%29%204949396>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which
their experiments lead.
-- Norbert Wiener
--
Michael Povolotskyi, PhD
Research Assistant Professor
Network for Computational Nanotechnology
Hall for Discover and Learning Research, Room 441
West Lafayette, IN 47907
Phone (765) 4949396
