Thanks Satish, this worked. On Wed, Jan 13, 2016 at 9:49 AM, Satish Balay <[email protected]> wrote:
> >>>>>>>> > Executing: mpif90 -o > /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest > > /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest.o > Testing executable > /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest > to see if it can be run > Executing: > /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest > Executing: > /var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest > ERROR while running executable: Could not execute > "/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest": > dyld: Library not loaded: > /Users/markadams/homebrew/lib/gcc/x86_64-apple-darwin13.4.0/4.9.1/libgfortran.3.dylib > Referenced from: /Users/markadams/homebrew/lib/libmpifort.12.dylib > Reason: image not found > <<<<<<<<<<< > > Mostlikely you haven't reinstalled mpich - as its refering to > gfortran-4.9.1. Current gfortran is 5.3 > GNU Fortran (Homebrew gcc 5.3.0) 5.3.0 > > > This is what I would do to reinstall brew > > 1. Make list of pkgs to reinstall > > brew leaves > reinstall.lst > > 2. delete all installed brew pacakges. > > brew cleanup > brew list > delete.lst > brew remove `cat delete.lst > > 3. Now reinstall all required packages > brew update > brew install `cat reinstall.lst` > > > Satish > > > On Wed, 13 Jan 2016, Mark Adams wrote: > > > I'm still having problems. I have upgraded gcc and mpich. I am now > > upgrading everything from homebrew. Any ideas on this error? > > thanks, > > > > On Wed, Jan 13, 2016 at 2:15 AM, Matthew Knepley <[email protected]> > wrote: > > > > > On Tue, Jan 12, 2016 at 6:31 PM, Satish Balay <[email protected]> > wrote: > > > > > >> > 'file' object has no attribute 'getvalue' File > > >> "/Users/markadams/Codes/petsc/config/configure.py", line 363, in > > >> petsc_configure > > >> > > >> Hm - have to figure this one out - but the primary issue is: > > >> > > >> > stderr: > > >> > gfortran: warning: couldn't understand kern.osversion '15.2.0 > > >> > ld: -rpath can only be used when targeting Mac OS X 10.5 or later > > >> > > > > > > I get this. The remedy I use is to put > > > > > > MACOSX_DEPLOYMENT_TARGET=10.5 > > > > > > in the environment. Its annoying, and quintessentially Mac. > > > > > > Matt > > > > > > > > >> Perhaps you've updated xcode or OSX - but did not reinstall > brew/gfortran. > > >> > > >> > Executing: mpif90 --version > > >> > stdout: > > >> > GNU Fortran (Homebrew gcc 4.9.1) 4.9.1 > > >> > > >> I suggest uninstalling/reinstalling homebrew packages. > > >> > > >> Satish > > >> > > >> > > >> > > >> On Tue, 12 Jan 2016, Mark Adams wrote: > > >> > > >> > I did nuke the arch directory. This has worked in the past and > don't > > >> know > > >> > what I might have changed. it's been awhile since I've > reconfigured. > > >> > Thanks, > > >> > Mark > > >> > > > >> > > >> > > > > > > > > > -- > > > What most experimenters take for granted before they begin their > > > experiments is infinitely more interesting than any results to which > their > > > experiments lead. > > > -- Norbert Wiener > > > > > > >
