Is this with the master branch of SLEPc? Which options are setting for the CISS solver?
Jose > El 9 may 2016, a las 18:03, Jonatan Midtgaard <[email protected]> > escribió: > > Hi all. I am using the EPSCISS solver in SLEPc to calculate eigenvalues of a > Hermitian matrix close to the origin. (Actually, it is only very nearly > Hermitian, but this happens also for NHEP-routines). I am running with 4 > cores, and the matrix prints fine with MatView() just before the EPSSolve. > Anyhow, I get the following error: > (I am new to both PETSc and this mailing list. Should error messages be > attached or pasted into the body?) > > [2]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [2]PETSC ERROR: Petsc has generated inconsistent data > [2]PETSC ERROR: ith 3844 block entry 7688 not owned by any process, upper > bound 7688 > [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [2]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 > [2]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon > May 9 17:47:26 2016 > [2]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc > CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 > --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 --with-debugging=0 > --with-ssl=0 > --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist > --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" > --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu > --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" > --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf > --with-suitesparse-dir=/usr/local/opt/suite-sparse > --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis > --with-parmetis-dir=/usr/local/opt/parmetis > --with-scalapack-dir=/usr/local/opt/scalapack > --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 > --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex > [2]PETSC ERROR: #1 VecScatterCreate_PtoS() line 2339 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [2]PETSC ERROR: #2 VecScatterCreate_StoP() line 2795 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [2]PETSC ERROR: #3 VecScatterCreate_PtoP() line 2984 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [2]PETSC ERROR: #4 VecScatterCreate() line 1570 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vscat.c > [2]PETSC ERROR: #5 PCSetUp_Redundant() line 133 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/impls/redundant/redundant.c > [2]PETSC ERROR: #6 PCSetUp() line 983 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/interface/precon.c > [3]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [3]PETSC ERROR: Petsc has generated inconsistent data > [3]PETSC ERROR: ith 1922 block entry 7688 not owned by any process, upper > bound 7688 > [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [3]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 > [3]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon > May 9 17:47:26 2016 > [3]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc > CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 > --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 --with-debugging=0 > --with-ssl=0 > --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist > --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" > --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu > --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" > --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf > --with-suitesparse-dir=/usr/local/opt/suite-sparse > --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis > --with-parmetis-dir=/usr/local/opt/parmetis > --with-scalapack-dir=/usr/local/opt/scalapack > --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 > --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex > [3]PETSC ERROR: #1 VecScatterCreate_PtoS() line 2339 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [3]PETSC ERROR: #2 VecScatterCreate_StoP() line 2795 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [3]PETSC ERROR: #3 VecScatterCreate_PtoP() line 2984 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [3]PETSC ERROR: #4 VecScatterCreate() line 1570 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vscat.c > [3]PETSC ERROR: #5 PCSetUp_Redundant() line 133 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/impls/redundant/redundant.c > [3]PETSC ERROR: #6 PCSetUp() line 983 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/interface/precon.c > [3]PETSC ERROR: #7 KSPSetUp() line 332 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c > [3]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [1]PETSC ERROR: Petsc has generated inconsistent data > [1]PETSC ERROR: ith 5766 block entry 7688 not owned by any process, upper > bound 7688 > [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [1]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 > [1]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon > May 9 17:47:26 2016 > [1]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc > CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 > --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 --with-debugging=0 > --with-ssl=0 > --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist > --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" > --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu > --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" > --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf > --with-suitesparse-dir=/usr/local/opt/suite-sparse > --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis > --with-parmetis-dir=/usr/local/opt/parmetis > --with-scalapack-dir=/usr/local/opt/scalapack > --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 > --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex > [1]PETSC ERROR: #1 VecScatterCreate_PtoS() line 2339 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [1]PETSC ERROR: #2 VecScatterCreate_StoP() line 2795 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [1]PETSC ERROR: #3 VecScatterCreate_PtoP() line 2984 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vpscat.c > [1]PETSC ERROR: #4 VecScatterCreate() line 1570 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/vec/vec/utils/vscat.c > [1]PETSC ERROR: #5 PCSetUp_Redundant() line 133 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/impls/redundant/redundant.c > [1]PETSC ERROR: #6 PCSetUp() line 983 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/pc/interface/precon.c > [1]PETSC ERROR: #7 KSPSetUp() line 332 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c > [1]PETSC ERROR: #8 KSPSolve() line 546 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c > [1]PETSC ERROR: [2]PETSC ERROR: #7 KSPSetUp() line 332 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c > [2]PETSC ERROR: #8 KSPSolve() line 546 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c > [2]PETSC ERROR: #9 SolveLinearSystem() line 337 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c > [2]PETSC ERROR: #10 EPSSolve_CISS() line 868 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c > [2]PETSC ERROR: #11 EPSSolve() line 101 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/interface/epssolve.c > [2]PETSC ERROR: #12 main() line 795 in hello.c > [2]PETSC ERROR: PETSc Option Table entries: > [2]PETSC ERROR: -n 31 > [2]PETSC ERROR: #8 KSPSolve() line 546 in > /private/tmp/petsc-20160503-43754-184nsu/petsc-3.6.3/src/ksp/ksp/interface/itfunc.c > [3]PETSC ERROR: #9 SolveLinearSystem() line 337 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c > [3]PETSC ERROR: #10 EPSSolve_CISS() line 868 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c > [3]PETSC ERROR: #11 EPSSolve() line 101 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/interface/epssolve.c > [3]PETSC ERROR: #12 main() line 795 in hello.c > [3]PETSC ERROR: PETSc Option Table entries: > [3]PETSC ERROR: -n 31 > #9 SolveLinearSystem() line 337 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c > [1]PETSC ERROR: #10 EPSSolve_CISS() line 868 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c > [1]PETSC ERROR: #11 EPSSolve() line 101 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/interface/epssolve.c > [1]PETSC ERROR: #12 main() line 795 in hello.c > [1]PETSC ERROR: PETSc Option Table entries: > [1]PETSC ERROR: -n 31 > ----------------End of Error Message -------send entire error message to > [email protected] > [3]PETSC ERROR: ----------------End of Error Message -------send entire error > message to [email protected] > [1]PETSC ERROR: ----------------End of Error Message -------send entire error > message to [email protected] > -------------------------------------------------------------------------- > MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD > with errorcode 77. > > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > You may or may not see output from other processes, depending on > exactly when Open MPI kills them. > -------------------------------------------------------------------------- > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch > system) has told this process to end > [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [0]PETSC ERROR: or see > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to > find memory corruption errors > [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and > run > [0]PETSC ERROR: to get more information on the crash. > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Signal received > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 > [0]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon > May 9 17:47:26 2016 > [0]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc > CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 > --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 --with-debugging=0 > --with-ssl=0 > --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist > --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" > --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu > --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" > --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf > --with-suitesparse-dir=/usr/local/opt/suite-sparse > --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis > --with-parmetis-dir=/usr/local/opt/parmetis > --with-scalapack-dir=/usr/local/opt/scalapack > --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 > --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex > [0]PETSC ERROR: #1 User provided function() line 0 in unknown file > [st-d13411.nfit.au.dk:90621] 3 more processes have sent help message > help-mpi-api.txt / mpi-abort > [st-d13411.nfit.au.dk:90621] Set MCA parameter "orte_base_help_aggregate" to > 0 to see all help / error messages > > ——————————— > When running with 1 core, I get the error message: > > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Error in external library > [0]PETSC ERROR: Error in Lapack xGGES 154 > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.6.3, Dec, 03, 2015 > [0]PETSC ERROR: hello on a complex named st-d13411.nfit.au.dk by jonat4n Mon > May 9 17:59:03 2016 > [0]PETSC ERROR: Configure options CC=/usr/local/bin/mpicc > CXX=/usr/local/bin/mpicxx F77=/usr/local/bin/mpif77 FC=/usr/local/bin/mpif90 > --with-shared-libraries=1 --with-pthread=0 --with-openmp=0 --with-debugging=0 > --with-ssl=0 > --with-superlu_dist-include=/usr/local/opt/superlu_dist/include/superlu_dist > --with-superlu_dist-lib="-L/usr/local/opt/superlu_dist/lib -lsuperlu_dist" > --with-superlu-include=/usr/local/Cellar/superlu43/4.3_1/include/superlu > --with-superlu-lib="-L/usr/local/Cellar/superlu43/4.3_1/lib -lsuperlu" > --with-fftw-dir=/usr/local/opt/fftw --with-netcdf-dir=/usr/local/opt/netcdf > --with-suitesparse-dir=/usr/local/opt/suite-sparse > --with-hdf5-dir=/usr/local/opt/hdf5 --with-metis-dir=/usr/local/opt/metis > --with-parmetis-dir=/usr/local/opt/parmetis > --with-scalapack-dir=/usr/local/opt/scalapack > --with-mumps-dir=/usr/local/opt/mumps/libexec --with-x=0 > --prefix=/usr/local/Cellar/petsc/3.6.3_4/complex --with-scalar-type=complex > [0]PETSC ERROR: #1 DSSolve_GNHEP() line 581 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/sys/classes/ds/impls/gnhep/dsgnhep.c > [0]PETSC ERROR: #2 DSSolve() line 543 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/sys/classes/ds/interface/dsops.c > [0]PETSC ERROR: #3 EPSSolve_CISS() line 943 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/impls/ciss/ciss.c > [0]PETSC ERROR: #4 EPSSolve() line 101 in > /private/tmp/slepc-20160503-86919-187yrgp/slepc-3.6.2/src/eps/interface/epssolve.c > [0]PETSC ERROR: #5 main() line 795 in hello.c > [0]PETSC ERROR: PETSc Option Table entries: > [0]PETSC ERROR: -n 31 > [0]PETSC ERROR: ----------------End of Error Message -------send entire error > message to [email protected]
