with petsc-master - you would have to use petsc4py-master. i.e try petsc-eab7b92 with petsc4py-6e8e093
Satish On Thu, 2 Jun 2016, neok m4700 wrote: > Hi Matthew, > > I've rebuilt petsc // petsc4py with following versions: > > 3.7.0 // 3.7.0 => same runtime error > 00c67f3 // 3.7.1 => fails to build petsc4py (error below) > 00c67f3 // 6e8e093 => same as above > f1b0812 (latest commit) // 6e8e093 (latest commit) => same as above > > In file included from src/PETSc.c:3:0: > src/petsc4py.PETSc.c: In function > ‘__pyx_pf_8petsc4py_5PETSc_6DMPlex_4createBoxMesh’: > src/petsc4py.PETSc.c:214629:112: error: incompatible type for argument 4 of > ‘DMPlexCreateBoxMesh’ > __pyx_t_4 = > __pyx_f_8petsc4py_5PETSc_CHKERR(DMPlexCreateBoxMesh(__pyx_v_ccomm, > __pyx_v_cdim, __pyx_v_interp, (&__pyx_v_newdm))); if (unlikely(__pyx_t_4 == > -1)) __PYX_ERR(42, 49, __pyx_L1_error) > > using > - numpy 1.11.0 > - openblas 0.2.18 > - openmpi 1.10.2 > > Thanks > > 2016-06-02 16:39 GMT+02:00 Matthew Knepley <knep...@gmail.com>: > > > On Thu, Jun 2, 2016 at 9:12 AM, neok m4700 <neok.m4...@gmail.com> wrote: > > > >> Hi, > >> > >> I built petsc 3.7.1 and petsc4py 3.7.0 (with openmpi 1.10.2) and ran the > >> examples in the demo directory. > >> > > > > I believe this was fixed in 'master': > > https://bitbucket.org/petsc/petsc/commits/00c67f3b09c0bcda06af5ed306d845d9138e5003 > > > > Is it possible to try this? > > > > Thanks, > > > > Matt > > > > > >> $ python test_mat_ksp.py > >> => runs as expected (serial) > >> > >> $ mpiexec -np 2 python test_mat_ksp.py > >> => fails with the following output: > >> > >> Traceback (most recent call last): > >> File "<...>/demo/kspsolve/test_mat_ksp.py", line 15, in <module> > >> execfile('petsc-ksp.py') > >> File "<...>/demo/kspsolve/test_mat_ksp.py", line 6, in execfile > >> try: exec(fh.read()+"\n", globals, locals) > >> File "<string>", line 15, in <module> > >> File "PETSc/KSP.pyx", line 384, in petsc4py.PETSc.KSP.solve > >> (src/petsc4py.PETSc.c:153555) > >> petsc4py.PETSc.Error: error code 92 > >> [0] KSPSolve() line 599 in <...>/src/ksp/ksp/interface/itfunc.c > >> [0] KSPSetUp() line 390 in <...>/src/ksp/ksp/interface/itfunc.c > >> [0] PCSetUp() line 968 in <...>/src/ksp/pc/interface/precon.c > >> [0] PCSetUp_ICC() line 21 in <...>/src/ksp/pc/impls/factor/icc/icc.c > >> [0] MatGetFactor() line 4240 in<...>/src/mat/interface/matrix.c > >> [0] You cannot overwrite this option since that will conflict with other > >> previously set options > >> [0] Could not locate solver package (null). Perhaps you must ./configure > >> with --download-(null) > >> > >> <...> > >> ------------------------------------------------------- > >> Primary job terminated normally, but 1 process returned > >> a non-zero exit code.. Per user-direction, the job has been aborted. > >> ------------------------------------------------------- > >> -------------------------------------------------------------------------- > >> mpirun detected that one or more processes exited with non-zero status, > >> thus causing > >> the job to be terminated. The first process to do so was: > >> > >> Process name: [[23110,1],0] > >> Exit code: 1 > >> -------------------------------------------------------------------------- > >> > >> > >> What have I done wrong ? > >> > >> > >> > >> > > > > > > -- > > What most experimenters take for granted before they begin their > > experiments is infinitely more interesting than any results to which their > > experiments lead. > > -- Norbert Wiener > > >