SuperLU_dist can be used in general with shift-and-invert, but for spectrum slicint (eps_interval) it does not work because it does not provide inertia (MatGetInertia) which is required in that case.
Jose > El 19 jul 2016, a las 16:38, Matthew Knepley <[email protected]> escribió: > > On Tue, Jul 19, 2016 at 12:42 PM, Hassan Md Mahmudulla > <[email protected]> wrote: > Hi all, > > I have been trying spectrum slicing with MUMPS external solver. The error > output is the following: > > A stack trace in the debugger would help, but it sounds like an error in > MUMPS. You can try SuperLU_dist instead. > > Thanks, > > Matt > > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, > probably memory access out of range > [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger > [0]PETSC ERROR: or see > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to > find memory corruption errors > [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run > [0]PETSC ERROR: to get more information on the crash. > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Signal received > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.5.3, Jan, 31, 2015 > [0]PETSC ERROR: /scratch1/scratchdirs/mhassan/dSLEPc/d540/../eigenSolverSS on > a sandybridge named nid00281 by mhassan Tue Jul 19 02:54 > :00 2016 > [0]PETSC ERROR: Configure options --known-mpi-int64_t=0 > --known-bits-per-byte=8 --known-sdot-returns-double=0 --known-snrm2-returns-do > uble=0 --known-level1-dcache-assoc=0 --known-level1-dcache-linesize=32 > --known-level1-dcache-size=32768 --known-memcmp-ok=1 --known-mp > i-c-double-complex=1 --known-mpi-long-double=1 --known-mpi-shared-libraries=0 > --known-sizeof-MPI_Comm=4 --known-sizeof-MPI_Fint=4 --kn > own-sizeof-char=1 --known-sizeof-double=8 --known-sizeof-float=4 > --known-sizeof-int=4 --known-sizeof-long-long=8 --known-sizeof-long=8 > --known-sizeof-short=2 --known-sizeof-size_t=8 --known-sizeof-void-p=8 > --with-ar=ar --with-batch=1 --with-cc=cc --with-clib-autodetec > t=0 --with-cxx=CC --with-cxxlib-autodetect=0 --with-debugging=0 > --with-dependencies=0 --with-fc=ftn --with-fortran-datatypes=0 --with- > fortran-interfaces=0 --with-fortranlib-autodetect=0 --with-ranlib=ranlib > --with-scalar-type=real --with-shared-ld=ar --with-etags=0 -- > with-dependencies=0 --with-dependencies=0 > --with-mpi-dir=/opt/cray/mpt/7.0.0/gni/mpich2-intel/140 --with-superlu=1 > --with-superlu-incl > ude=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/include > --with-superlu-lib=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/lib/libsuperlu.a > --with-superlu_dist=1 > --with-superlu_dist-include=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/include > --with-superlu_dist-lib=/opt/cray > /tpsl/1.4.4/INTEL/140/sandybridge/lib/libsuperlu_dist.a --with-parmetis=1 > --with-parmetis-include=/opt/cray/tpsl/1.4.4/INTEL/140/sandy > bridge/include > --with-parmetis-lib=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/lib/libparmetis.a > --with-metis=1 --with-metis-include=/o > pt/cray/tpsl/1.4.4/INTEL/140/sandybridge/include > --with-metis-lib=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/lib/libmetis.a > --with-pts > cotch=1 > --with-ptscotch-include=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/include > --with-ptscotch-lib="-L/opt/cray/tpsl/1.4.4/INTEL/1 > 40/sandybridge/lib -lptscotch -lscotch -lptscotcherr -lscotcherr" > --with-scalapack=1 --with-scalapack-include=/opt/cray/libsci/13.0.3/ > INTEL/140/x86_64/include > --with-scalapack-lib="-L/opt/cray/libsci/13.0.3/INTEL/140/x86_64/lib > -lsci_intel_mpi_mp -lsci_intel_mp" --wit > h-mumps=1 > --with-mumps-include=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/include > --with-mumps-lib="-L/opt/cray/tpsl/1.4.4/INTEL/140/s > andybridge/lib -lcmumps -ldmumps -lesmumps -lsmumps -lzmumps -lmumps_common > -lptesmumps -lpord" --CFLAGS="-xavx -openmp -O3 " --CXXFLA > GS="-xavx -openmp -O3 " --FFLAGS="-xavx -openmp -O3 " --LIBS=-lstdc++ > --CXX_LINKER_FLAGS= --PETSC_ARCH=sandybridge --prefix=/opt/cra > y/petsc/3.5.3.0/real/INTEL/140/sandybridge --with-hypre=1 > --with-hypre-include=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/include --wi > th-hypre-lib=/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/lib/libHYPRE.a > --with-sundials=1 --with-sundials-include=/opt/cray/tpsl/1.4.4/ > INTEL/140/sandybridge/include > --with-sundials-lib="-L/opt/cray/tpsl/1.4.4/INTEL/140/sandybridge/lib > -lsundials_cvode -lsundials_cvodes > -lsundials_ida -lsundials_idas -lsundials_kinsol -lsundials_nvecparallel > -lsundials_nvecserial" > [0]PETSC ERROR: #1 User provided function() line 0 in unknown file > Rank 0 [Tue Jul 19 02:54:04 2016] [c1-0c1s6n1] application called > MPI_Abort(MPI_COMM_WORLD, 59) - process 0 > srun: error: nid00281: task 0: Aborted > srun: Terminating job step 1330433.0 > slurmstepd: *** STEP 1330433.0 ON nid00281 CANCELLED AT 2016-07-19T02:54:04 > *** > srun: Job step aborted: Waiting up to 32 seconds for job step to finish. > srun: error: nid00281: tasks 1-17: Killed > srun: error: nid00282: tasks 18-35: Killed > > > > I ran the same code in my pc with 8 processor. It had no issues. But when I > tried in a different machine, I am getting this. Any idea? Can I use > Superlu_dist instead of MUMPS? I got INFOG(1)=-22 error from MUMPS in another > run. > > > > Thanks, > > > > M Hassan > > > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener
