Thank you for the suggestion! Seems like a reasonable way to go. Not working for me, however, I suspect because I'm using homebrew installations of PETSc and SLEPc (I don't think all the makefiles are kept). Any other way to do the same thing by chance? Worst case I could use a non-homebrew installation but I'd prefer not to mess with that if I can help it...
Thanks, Austin On Wed, Mar 22, 2017 at 11:20 AM Jose E. Roman <jro...@dsic.upv.es> wrote: > Try the following: > $ cd $SLEPC_DIR > $ make getlinklibs_slepc > Then copy the output and paste it at the end of your f2py command. > > Jose > > > > El 22 mar 2017, a las 16:38, Austin Herrema <aherr...@iastate.edu> > escribió: > > > > Hello all, > > > > I am trying to do as the subject line describes--use f2py to run a large > PETSc/SLEPc fortran finite element code through python. I really only need > to wrap the outermost function of the fortran code--don't need any access > to subroutines. I'll describe what I'm doing, some of which I'm not 100% > confident is correct (not much experience with f2py)--feel free to > correct/redirect any of it. > > > > First, I'm editing the fortran code so that the top-level function is a > subroutine rather than a main program (it's my understanding that this is > required for f2py?). > > > > I use my regular makefile (modeled after a standard SLEPc makefile from > the user guide) to compile all of the .f90/.F90 files (many of them) to .o > files using SLEPc/PETSc rules. The final linking phase fails since there > isn't a main program, but I'm just ignoring that for now since that's not > what I ultimately need... > > > > Using a python script, I set up and run the f2py command. Right now it > has the form... > > "f2py -c -m modname outer_driver.f90 file1.o file2.o file3.o..." etc. > > > > This appears to work, but upon attempting to import, it cannot find the > SLEPc (and, I presume, PETSc) objects/functions: > > > > >>> import mod_name > > Traceback (most recent call last): > > File "<stdin>", line 1, in <module> > > ImportError: dlopen(./mod_name.so, 2): Symbol not found: _epscreate_ > > Referenced from: ./mod_name.so > > Expected in: flat namespace > > in ./mod_name.so > > > > Based on this discussion, I believe I need to somehow include > PETSc/SLEPc info when linking with f2py. Is that correct? Any direction on > how to do that? I don't quite understand what the OP of that question > ultimately ended up doing to get it to work. I tried using the -I flag > pointing to the slepc_common file (like the SLEPc makefile does). The > problem is that that is a file, not a directory, which contains a number of > other makefile-style variables--so it works to include it in a makefile, > but doesn't work in python. Maybe there are only a few directories I really > need to include? Or is it possible to somehow run f2py through a makefile? > I'm a bit ignorant in that realm as well. > > > > Thank you for any help or suggestions! > > Austin > > > > > > -- > > Austin Herrema > > PhD Student | Graduate Research Assistant | Iowa State University > > Wind Energy Science, Engineering, and Policy | Mechanical Engineering > > -- *Austin Herrema* PhD Student | Graduate Research Assistant | Iowa State University Wind Energy Science, Engineering, and Policy | Mechanical Engineering
