Dear Matthew,
Thanks. It went further, but now I get:
TESTING: configureMPIEXEC from
config.packages.MPI(/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/packages/MPI.py:143)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
-------------------------------------------------------------------------------
Must give a default value for known-mpi-shared-libraries since executables
cannot be run
*******************************************************************************
Last lines from the log:
File "./config/configure.py", line 405, in petsc_configure
framework.configure(out = sys.stdout)
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/framework.py",
line 1090, in configure
self.processChildren()
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/framework.py",
line 1079, in processChildren
self.serialEvaluation(self.childGraph)
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/framework.py",
line 1060, in serialEvaluation
child.configure()
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/package.py",
line 791, in configure
self.executeTest(self.checkSharedLibrary)
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/base.py",
line 126, in executeTest
ret = test(*args,**kargs)
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/packages/MPI.py",
line 135, in checkSharedLibrary
self.shared = self.libraries.checkShared('#include
<mpi.h>\n','MPI_Init','MPI_Initialized','MPI_Finalize',checkLink =
self.checkPackageLink,libraries = self.lib, defaultArg =
'known-mpi-shared-libraries', ex
ecutor = self.mpiexec)
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/libraries.py",
line 471, in checkShared
if self.checkRun(defaultIncludes, body, defaultArg = defaultArg, executor =
executor):
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/base.py",
line 628, in checkRun
(output, returnCode) = self.outputRun(includes, body, cleanup, defaultArg,
executor)
File
"/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/base.py",
line 598, in outputRun
raise ConfigureSetupError('Must give a default value for
'+defaultOutputArg+' since executables cannot be run')
Any ideas? Something related with
--with-shared-libraries=0 \
--with-batch=1 \
The first I set because it was in the cray example, and the second because
aprun (the mpiexec of Cray) is not available in the frontend.
Thanks,
Guilherme V.
dr. ir. Guilherme Vaz | CFD Research Coordinator / Senior CFD Researcher |
Research & Development
MARIN | T +31 317 49 33 25 | M +31 621 13 11 97 |
[email protected]<mailto:[email protected]> | www.marin.nl<http://www.marin.nl>
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________________________________
From: Matthew Knepley <[email protected]>
Sent: Tuesday, June 13, 2017 2:34 PM
To: Vaz, Guilherme
Cc: PETSc
Subject: Re: [petsc-users] PETSC on Cray Hazelhen
On Tue, Jun 13, 2017 at 3:48 AM, Vaz, Guilherme
<[email protected]<mailto:[email protected]>> wrote:
Dear all,
I am trying to install PETSC on a Cray XC40 system (Hazelhen) with the usual
Cray wrappers for Intel compilers, with some chosen external packages and MKL
libraries.
I read some threads in the mailing list about this, and I tried the
petsc-3.7.5/config/examples/arch-cray-xt6-pkgs-opt.py configuration options.
After trying this (please abstract from my own env vars),
CONFOPTS="--prefix=$PETSC_INSTALL_DIR \
--with-cc=cc \
--with-cxx=CC \
--with-fc=ftn \
--with-clib-autodetect=0 \
--with-cxxlib-autodetect=0 \
--with-fortranlib-autodetect=0 \
--COPTFLAGS=-fast -mp \
--CXXOPTFLAGS=-fast -mp \
--FOPTFLAGS=-fast -mp \
--with-shared-libraries=0 \
--with-batch=1 \
--with-x=0 \
--with-mpe=0 \
--with-debugging=0 \
--download-superlu_dist=$SOURCE_DIR/$SUPERLU_SOURCE_FILE \
--with-blas-lapack-dir=$BLASDIR \
--download-parmetis=$SOURCE_DIR/$PARMETIS_SOURCE_FILE \
--download-metis=$SOURCE_DIR/$METIS_SOURCE_FILE \
--with-external-packages-dir=$INSTALL_DIR \
--with-ssl=0 "
I get the following error:
TESTING: checkFortranLinkingCxx from
config.compilers(/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/compilers.py:1097)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
-------------------------------------------------------------------------------
Fortran could not successfully link C++ objects
*******************************************************************************
Does it ring a bell? Any tips?
You turned off autodetection, so it will not find libstdc++. That either has to
be put in LIBS, or I would recommend
--with-cxx=0
since nothing you have there requires C++.
Thanks,
Matt
Thanks,
Guilherme V.
dr. ir. Guilherme Vaz | CFD Research Coordinator / Senior CFD Researcher |
Research & Development
MARIN | T +31 317 49 33 25<tel:+31%20317%20493%20325> | M +31 621 13 11 97 |
[email protected]<mailto:[email protected]> | www.marin.nl<http://www.marin.nl>
[LinkedIn]<https://www.linkedin.com/company/marin> [YouTube]
<http://www.youtube.com/marinmultimedia> [Twitter]
<https://twitter.com/MARIN_nieuws> [Facebook]
<https://www.facebook.com/marin.wageningen>
MARIN news: Maritime Safety seminar, September 12,
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--
What most experimenters take for granted before they begin their experiments is
infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener
http://www.caam.rice.edu/~mk51/
