On Fri, Sep 1, 2017 at 5:48 AM, Afrah Najib <[email protected]> wrote:
> I want to use use PETSc in a hybrid solver(direct- iterative) called > PDSLin 2.0.0.[http://portal.nersc.gov/project/sparse/pdslin/] > > the version of PETSc used is petsc3.7.6. When running the examples, I got > the following errors: > > > > :~/pdslin_2.0.0/examples$ make all > /usr/share/mpich-install/bin/mpicc -I/usr/share/mpich-install/include > -I/home/afrah/pdslin_2.0.0/include -I/home/afrah/SuperLU_DIST_5.1.2/SRC > -I/usr/include -I/usr/local/include > -I/home/afrah/PETSc-library2/petsc-3.7.6/source/include > -I/home/afrah/PETSc-library2/petsc-3.7.6-complex/source/include > -I/home/afrah/scotch-6.0.4/include -c dtest.c -o dtest.o -g -O0 -fopenmp > -std=c99 -DWITH_PETSC > dtest.c: In function ‘main’: > dtest.c:53:20: warning: implicit declaration of function > ‘pdslin_print_input’ [-Wimplicit-function-declaration] > if ( !proc_id ) pdslin_print_input(&input); > ^ > dtest.c:127:39: warning: implicit declaration of function > ‘pdslin_print_stat’ [-Wimplicit-function-declaration] > if( input.verbose == PDSLin_VALL ) pdslin_print_stat( &sta > Note that below, you do not have -lpetsc. I would recommend using the PETSc makefiles, but you can also run 'make getlinklibs' to the correct link line. Thanks, Matt > ^ > /usr/share/mpich-install/bin/mpicc -fopenmp dtest.o > -L/usr/share/mpich-install/lib/libmpi.a > /home/afrah/pdslin_2.0.0/lib/libpdslin.a > -lm -llapack -lblas -Wl,-rpath,/home/afrah/SuperLU_DIST_5.1.2/lib > -L/home/afrah/SuperLU_DIST_5.1.2/lib -lsuperlu_dist > -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lmetis > -Wl,-rpath,/usr/share/parmetis/lib -L/usr/share/parmetis/lib -lparmetis > -L/home/afrah/PETSc-library2/petsc-3.7.6/source/lib/libpetsc.so -o dtest > -g -O0 -fopenmp -std=c99 -DWITH_PETSC > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function > `PetscMPITypeSizeComm': > /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328: > undefined reference to `PetscError' > /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329: > undefined reference to `PetscError' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function > `dcomp_schur': > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:92: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:92: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:121: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:121: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:129: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho > me/afrah/pdslin_2.0.0/src/dpdslin_core.c:129: more undefined references > to `petsc_gather_ct' follow > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function > `dcomp_sol': > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:486: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:486: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:495: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:495: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:496: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho > me/afrah/pdslin_2.0.0/src/dpdslin_core.c:496: more undefined references > to `petsc_allreduce_ct' follow > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function > `dcomp_sol': > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:614: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:614: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:625: undefined reference to > `petsc_send_len' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:659: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:659: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:793: undefined reference to > `petsc_send_len' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:795: undefined reference to > `petsc_send_len' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:803: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:803: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:812: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:812: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:862: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:862: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:891: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho > me/afrah/pdslin_2.0.0/src/dpdslin_core.c:891: more undefined references > to `petsc_allreduce_ct' follow > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function > `dallgather_ssol': > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1094: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1094: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function > `dsparsify_schur': > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1331: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1331: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1357: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o):/ho > me/afrah/pdslin_2.0.0/src/dpdslin_core.c:1357: more undefined references > to `petsc_gather_ct' follow > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_core.o): In function > `dsparsify_schur': > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1789: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1789: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1861: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_core.c:1861: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function > `PetscMPITypeSizeComm': > /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328: > undefined reference to `PetscError' > /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329: > undefined reference to `PetscError' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function > `dpetsc_init': > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:60: undefined reference to > `PetscInitialized' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:62: undefined reference to > `PetscInitialize' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:63: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function > `dpetsc_clean': > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:71: undefined reference to > `PetscFinalize' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:72: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function > `dsolve_schur_petsc': > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:164: undefined reference to > `petsc_send_len' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:229: undefined reference to > `petsc_send_len' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:251: undefined reference to > `petsc_send_len' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:292: undefined reference to > `VecCreate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:292: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:293: undefined reference to > `VecSetSizes' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:293: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:294: undefined reference to > `VecSetFromOptions' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:294: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:295: undefined reference to > `VecDuplicate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:295: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:296: undefined reference to > `VecDuplicate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:296: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:305: undefined reference to > `MatCreate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:305: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:306: undefined reference to > `MatSetSizes' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:306: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:308: undefined reference to > `MatSetFromOptions' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:308: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:311: undefined reference to > `MatCreateShell' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:312: undefined reference to > `MatShellSetOperation' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:325: undefined reference to > `MatCreate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:325: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:326: undefined reference to > `MatSetSizes' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:326: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:328: undefined reference to > `MatSetFromOptions' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:328: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:346: undefined reference to > `MatMPIAIJSetPreallocation' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:347: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:348: undefined reference to > `MatSeqAIJSetPreallocation' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:349: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:359: undefined reference to > `MatMPIAIJSetPreallocation' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:360: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:361: undefined reference to > `MatSeqAIJSetPreallocation' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:362: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:377: undefined reference to > `MatSetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:378: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:383: undefined reference to > `MatAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:383: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:384: undefined reference to > `MatAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:384: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:386: undefined reference to > `MatAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:386: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:387: undefined reference to > `MatAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:387: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:396: undefined reference to > `VecSetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:397: undefined reference to > `VecAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:397: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:398: undefined reference to > `VecAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:398: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:409: undefined reference to > `KSPCreate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:410: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:421: undefined reference to > `KSPSetOperators' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:427: undefined reference to > `KSPSetOperators' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:430: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:439: undefined reference to > `KSPSetFromOptions' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:439: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:440: undefined reference to > `KSPSetTolerances' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:441: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:450: undefined reference to > `KSPSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:450: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:451: undefined reference to > `KSPGMRESSetRestart' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:451: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:463: undefined reference to > `KSPSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:463: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:468: undefined reference to > `KSPGMRESSetRestart' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:468: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:470: undefined reference to > `KSPGMRESModifiedGramSchmidtOrthogonalization' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:470: undefined reference to > `KSPGMRESSetOrthogonalization' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:471: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:473: undefined reference to > `KSPGMRESClassicalGramSchmidtOrthogonalization' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:473: undefined reference to > `KSPGMRESSetOrthogonalization' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:474: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:481: undefined reference to > `KSPSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:481: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:483: undefined reference to > `KSPSetPCSide' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:483: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:488: undefined reference to > `KSPSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:488: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:495: undefined reference to > `KSPGetPC' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:495: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:502: undefined reference to > `PCSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:502: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:503: undefined reference to > `PCFactorSetLevels' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:503: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:510: undefined reference to > `PCSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:510: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:520: undefined reference to > `PCFactorSetDropTolerance' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:522: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:527: undefined reference to > `PCSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:527: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:528: undefined reference to > `PCASMSetOverlap' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:528: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:535: undefined reference to > `KSPSetUp' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:535: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:536: undefined reference to > `PCASMGetSubKSP' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:536: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:538: undefined reference to > `KSPGetPC' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:538: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:539: undefined reference to > `KSPSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:539: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:540: undefined reference to > `PCSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:540: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:544: undefined reference to > `PCSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:572: undefined reference to > `PCShellSetApply' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:573: undefined reference to > `PCShellSetContext' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:589: undefined reference to > `KSPSetInitialGuessNonzero' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:590: undefined reference to > `VecSetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:592: undefined reference to > `VecAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:592: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:593: undefined reference to > `VecAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:593: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:595: undefined reference to > `KSPSetInitialGuessNonzero' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:601: undefined reference to > `KSPSolve' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:602: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:613: undefined reference to > `KSPGetConvergedReason' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:617: undefined reference to > `KSPGetIterationNumber' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:628: undefined reference to > `KSPGetResidualNorm' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:635: undefined reference to > `PETSC_VIEWER_STDOUT_' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:635: undefined reference to > `KSPView' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:636: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:664: undefined reference to > `VecGetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:677: undefined reference to > `VecDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:677: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:678: undefined reference to > `VecDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:678: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:679: undefined reference to > `VecDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:679: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:680: undefined reference to > `MatDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:680: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:681: undefined reference to > `KSPDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:681: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:707: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:707: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:708: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:708: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function > `dprecond_slu': > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:781: undefined reference to > `PCShellGetContext' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:847: undefined reference to > `VecGetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:848: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:858: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:858: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:876: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:876: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:881: undefined reference to > `VecSetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:883: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:884: undefined reference to > `VecAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:884: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:885: undefined reference to > `VecAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:885: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function > `dmatop': > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1025: undefined reference to > `MatShellGetContext' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1064: undefined reference to > `VecGetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1066: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1093: undefined reference to > `VecSetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1095: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1096: undefined reference to > `VecAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1096: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1097: undefined reference to > `VecAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1097: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function > `dmat_schur': > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1161: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1161: undefined reference to > `petsc_gather_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1379: undefined reference to > `petsc_send_len' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1399: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1399: undefined reference to > `petsc_allreduce_ct' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_petsc.o): In function > `dpetsc_iluksolver': > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference to > `PETSC_COMM_WORLD' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference to > `VecCreate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1486: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1487: undefined reference to > `VecSetSizes' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1487: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1488: undefined reference to > `VecSetFromOptions' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1488: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1489: undefined reference to > `VecDuplicate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1489: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1490: undefined reference to > `VecDuplicate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1490: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference to > `PETSC_COMM_WORLD' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference to > `MatCreate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1498: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1499: undefined reference to > `MatSetSizes' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1499: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1501: undefined reference to > `MatSetFromOptions' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1501: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1515: undefined reference to > `MatSetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1520: undefined reference to > `MatAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1520: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1521: undefined reference to > `MatAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1521: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1529: undefined reference to > `VecSetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1530: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1531: undefined reference to > `VecAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1531: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1532: undefined reference to > `VecAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1532: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1538: undefined reference to > `PETSC_COMM_WORLD' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1538: undefined reference to > `KSPCreate' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1539: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1548: undefined reference to > `KSPSetOperators' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1550: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1557: undefined reference to > `KSPSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1557: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1558: undefined reference to > `KSPSetTolerances' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1559: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1561: undefined reference to > `KSPSetResidualHistory' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1567: undefined reference to > `KSPGetPC' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1567: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1568: undefined reference to > `PCSetType' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1568: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1572: undefined reference to > `PCFactorSetLevels' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1572: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1574: undefined reference to > `KSPSetFromOptions' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1574: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1580: undefined reference to > `KSPSolve' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1581: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1586: undefined reference to > `KSPGetConvergedReason' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1593: undefined reference to > `KSPGetIterationNumber' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1594: undefined reference to > `KSPGetResidualNorm' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1610: undefined reference to > `VecAssemblyBegin' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1610: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1611: undefined reference to > `VecAssemblyEnd' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1611: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1615: undefined reference to > `VecGetValues' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference to > `PETSC_COMM_WORLD' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference to > `PETSC_VIEWER_STDOUT_' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1622: undefined reference to > `KSPView' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1623: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1628: undefined reference to > `VecDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1628: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1629: undefined reference to > `VecDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1629: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1630: undefined reference to > `VecDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1630: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1631: undefined reference to > `MatDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1631: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1632: undefined reference to > `KSPDestroy' > /home/afrah/pdslin_2.0.0/src/dpdslin_petsc.c:1632: undefined reference to > `PetscError' > /home/afrah/pdslin_2.0.0/lib/libpdslin.a(dpdslin_fgmres.o): In function > `PetscMPITypeSizeComm': > /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:328: > undefined reference to `PetscError' > /home/afrah/PETSc-library2/petsc-3.7.6/source/include/petsclog.h:329: > undefined reference to `PetscError' > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener http://www.caam.rice.edu/~mk51/
