Correction to [3]. This actually is the whole stack down to SNESSolve... [3]
[0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Arguments are incompatible [0]PETSC ERROR: Ratio between levels: (mx - 1)/(Mx - 1) must be integer: mx 1536 Mx 768 [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.8.2-48-g851ec02 GIT Date: 2017-12-05 09:52:17 -0600 [0]PETSC ERROR: shem_fw64gnu_const.x on a gnu_openmpi named cluster-x.rz.RWTH-Aachen.DE by hb111949 Tue Jan 9 16:26:56 2018 [0]PETSC ERROR: Configure options --download-fblaslapack --with-cc=mpicc -with-fc=mpif90 --with-cxx=mpicxx --download-hypre --download-superlu_dist --download-suitesparse --download-scalapack --download-blacs --download-hdf5 --download-parmetis --download-metis --with-debugging=0 --download-mumps [0]PETSC ERROR: #1 DMCreateInjection_DA_3D() line 1195 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/impls/da/dainterp.c [0]PETSC ERROR: #2 DMCreateInjection_DA() line 1283 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/impls/da/dainterp.c [0]PETSC ERROR: #3 DMCreateInjection() line 1082 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/interface/dm.c [0]PETSC ERROR: #4 DMCoarsen_DA() line 1219 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/impls/da/da.c [0]PETSC ERROR: #5 DMCoarsen() line 2427 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/interface/dm.c [0]PETSC ERROR: #6 PCSetUp_MG() line 618 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/ksp/pc/impls/mg/mg.c [0]PETSC ERROR: #7 PCSetUp() line 924 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/ksp/pc/interface/precon.c [0]PETSC ERROR: #8 KSPSetUp() line 381 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: #9 KSPSolve() line 612 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/ksp/ksp/interface/itfunc.c [0]PETSC ERROR: #10 SNESSolve_NEWTONLS() line 224 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/snes/impls/ls/ls.c [0]PETSC ERROR: #11 SNESSolve() line 4179 in /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/snes/interface/snes.c [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Development GIT revision: v3.8.2-48-g851ec02 GIT Date: 2017-12-05 09:52:17 -0600 [0]PETSC ERROR: shem_fw64gnu_const.x on a gnu_openmpi named cluster-x.rz.RWTH-Aachen.DE by hb111949 Tue Jan 9 16:26:56 2018 [0]PETSC ERROR: Configure options --download-fblaslapack --with-cc=mpicc -with-fc=mpif90 --with-cxx=mpicxx --download-hypre --download-superlu_dist --download-suitesparse --download-scalapack --download-blacs --download-hdf5 --download-parmetis --download-metis --with-debugging=0 --download-mumps [0]PETSC ERROR: #12 User provided function() line 0 in unknown file -------------------------------------------------------------------------- -- Dipl.-Math. Henrik Büsing Institute for Applied Geophysics and Geothermal Energy E.ON Energy Research Center RWTH Aachen University ------------------------------------------------------ Mathieustr. 10 | Tel +49 (0)241 80 49907 52074 Aachen, Germany | Fax +49 (0)241 80 49889 ------------------------------------------------------ http://www.eonerc.rwth-aachen.de/GGE [email protected] ------------------------------------------------------ > -----Ursprüngliche Nachricht----- > Von: petsc-users [mailto:[email protected]] Im Auftrag von > Buesing, Henrik > Gesendet: 09 January 2018 16:13 > An: 'Smith, Barry F.' <[email protected]> > Cc: petsc-users <[email protected]> > Betreff: Re: [petsc-users] Geometric multigrid with a cell-centered > discretization > > Sorry (again), for posting only part of the error message... > > So, here it comes. I will first [1] show the code snippets I am using, > then second [2] I will show the PETSc options, and finally [3] the error > message I get. > The grid is 1536 x 1 x 256 in x,y,z-direction. Thus, we see the first > level of coarsening in x-direction here. > > Thank you! > Henrik > > [1] > CALL > DMDACreate3d(PETSC_COMM_WORLD,DM_BOUNDARY_GHOSTED,DM_BOUNDARY_GHOSTED,DM > _BOUNDARY_GHOSTED,& > DMDA_STENCIL_STAR, I0g,J0g,K0g, PETSC_DECIDE, > PETSC_DECIDE,PETSC_DECIDE, petsc_two, petsc_one, & > > PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER, petsc_da, > petsc_ierr) > CALL DMSetUp(petsc_da,petsc_ierr) ... > CALL DMSetFromOptions(petsc_da, petsc_ierr) > CALL DMDASetInterpolationType(petsc_da, DMDA_Q0, petsc_ierr) > CALL SNESSetDM(petsc_snes, petsc_da, petsc_ierr) > CALL SNESSetFromOptions(petsc_snes,petsc_ierr) > > [2] -snes_monitor -snes_linesearch_monitor -snes_type newtonls - > snes_linesearch_type basic -ksp_type fgmres -ksp_max_it 1000 -snes_stol > 1e-06 -snes_rtol 1e-06 -snes_atol 1e-6 -ksp_gmres_restart 100 - > ksp_monitor -pc_type mg -da_refine_y 1 -ksp_converged_reason - > snes_converged_reason -ksp_monitor -ksp_view -pc_mg_levels 2 - > options_left > > [3] > [0]PETSC ERROR: --------------------- Error Message -------------------- > ------------------------------------------ > [0]PETSC ERROR: Arguments are incompatible [0]PETSC ERROR: Ratio between > levels: (mx - 1)/(Mx - 1) must be integer: mx 1536 Mx 768 [0]PETSC > ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for > trouble shooting. > [0]PETSC ERROR: Petsc Development GIT revision: v3.8.2-48-g851ec02 GIT > Date: 2017-12-05 09:52:17 -0600 [0]PETSC ERROR: > /rwthfs/rz/cluster/work/hb111949/EoCoE/aixcelerate17/gge_gnu/bench_run/0 > 00023/000000_copy_sub_launch/work/shem_fw64gnu_const.x on a gnu_openmpi > named linuxbmc0008.rz.RWTH-Aachen.DE by hb111949 Tue Jan 9 16:04:39 > 2018 [0]PETSC ERROR: Configure options --download-fblaslapack --with- > cc=mpicc -with-fc=mpif90 --with-cxx=mpicxx --download-hypre --download- > superlu_dist --download-suitesparse --download-scalapack --download- > blacs --download-hdf5 --download-parmetis --download-metis --with- > debugging=0 --download-mumps [0]PETSC ERROR: #1 > DMCreateInjection_DA_3D() line 1195 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/impls/da/dainterp.c > [0]PETSC ERROR: #2 DMCreateInjection_DA() line 1283 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/impls/da/dainterp.c > [0]PETSC ERROR: #3 DMCreateInjection() line 1082 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/interface/dm.c > [0]PETSC ERROR: #4 DMCoarsen_DA() line 1219 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/impls/da/da.c > [0]PETSC ERROR: #5 DMCoarsen() line 2427 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/dm/interface/dm.c > [0]PETSC ERROR: #6 PCSetUp_MG() line 618 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/ksp/pc/impls/mg/mg.c > [0]PETSC ERROR: #7 PCSetUp() line 924 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/ksp/pc/interface/precon. > c > [0]PETSC ERROR: #8 KSPSetUp() line 381 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/ksp/ksp/interface/itfunc > .c > [0]PETSC ERROR: #9 KSPSolve() line 612 in > /rwthfs/rz/cluster/work/hb111949/Code/petsc/src/ksp/ksp/interface/itfunc > .c > [0]PETSC ERROR: [1]PETSC ERROR: --------------------- Error Message ---- > ---------------------------------------------------------- > > > -- > Dipl.-Math. Henrik Büsing > Institute for Applied Geophysics and Geothermal Energy E.ON Energy > Research Center RWTH Aachen University > ------------------------------------------------------ > Mathieustr. 10 | Tel +49 (0)241 80 49907 > 52074 Aachen, Germany | Fax +49 (0)241 80 49889 > ------------------------------------------------------ > http://www.eonerc.rwth-aachen.de/GGE > [email protected] > ------------------------------------------------------ > > > -----Ursprüngliche Nachricht----- > > Von: Smith, Barry F. [mailto:[email protected]] > > Gesendet: 09 January 2018 15:10 > > An: Buesing, Henrik <[email protected]> > > Cc: petsc-users <[email protected]> > > Betreff: Re: [petsc-users] Geometric multigrid with a cell-centered > > discretization > > > > > > With cell centered elements each element is sliced in half in each > > of the three directions for refinement (or you can refine only in 1 or > > 2 of the dimensions if you like). This means that the ratio of mx to > > MX needs to be 2 (or 4).So your numbers are fine. > > > > > On Jan 9, 2018, at 7:59 AM, Buesing, Henrik <[email protected] > > aachen.de> wrote: > > > > > > Dear all, > > > > > > I am using DMDACreate3d to generate my domain and a cell-centered > > > two-point flux approximation as discretization. I use geometric > > > Multigrid (-pc_type mg) with DMDASetInterpolationType(petsc_da, > > > DMDA_Q0, petsc_ierr). With DM_BOUNDARY_GHOSTED as boundary type in > > > DMDACreate3d, I get > > > > > > [0]PETSC ERROR: Arguments are incompatible [0]PETSC ERROR: Ratio > > > between levels: (mx - 1)/(Mx - 1) must be integer: mx 1536 Mx 768 > > > > We need ALL the output from the error (always). It should never be > > doing this check in your case so something is wrong with the order of > > your code perhaps. > > > > Barry > > > > > > > > With DM_BOUNDARY_PERIODIC, I get invalid accesses when I assemble > > > the > > matrix. > > > > > > Can I somehow tell him, that I have a cell-centered grid, or do I > > > have > > to resort to using N+1 in my dimensions? > > > > > > Thank you! > > > Henrik > > > > > > > > > -- > > > Dipl.-Math. Henrik Büsing > > > Institute for Applied Geophysics and Geothermal Energy E.ON Energy > > > Research Center RWTH Aachen University > > > ------------------------------------------------------ > > > Mathieustr. 10 | Tel +49 (0)241 80 49907 > > > 52074 Aachen, Germany | Fax +49 (0)241 80 49889 > > > ------------------------------------------------------ > > > http://www.eonerc.rwth-aachen.de/GGE > > > [email protected] > > > ------------------------------------------------------
