Hum, after rereading Barry's email I feel I am confused about the point
of adding the -E flag.
So I am pasting the full log of the make in case it may be useful:
(petsc) br146-244:qgsolver aponte$ make
PYTHON=/Users/aponte/.miniconda3/envs/petsc/bin/python build
/Users/aponte/.miniconda3/envs/petsc/bin:/opt/local/bin:/opt/local/sbin:/Users/aponte/.miniconda3/bin:/opt/local/bin:/opt/local/sbin:/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/Library/TeX/texbin:/usr/local/bin:/Users/aponte/Installed/f90tohtml:/usr/local/mysql/bin:/Users/aponte/Tools/ftagshtml-0.520/bin:/usr/local/ferret/bin:/usr/local/bin:/Users/aponte/Installed/f90tohtml:/usr/local/mysql/bin:/Users/aponte/Tools/ftagshtml-0.520/bin:/usr/local/ferret/bin
/Users/aponte/.miniconda3/envs/petsc/bin/python
/bin/sh
env \
F77="/opt/local/bin/mpif90-openmpi-gcc49" F77FLAGS="-Os -Os
-I/opt/local/include" \
F90="/opt/local/bin/mpif90-openmpi-gcc49" F90FLAGS="-Os -Os
-I/opt/local/include -E" \
LDSHARED="/opt/local/bin/mpif90-openmpi-gcc49" \
/Users/aponte/.miniconda3/envs/petsc/bin/python setup.py -q
build_ext --inplace
Reading .f2py_f2cmap ...
Mapping "integer(kind=HANDLE_KIND)" to "long"
Mapping "integer(kind=handle_kind)" to "long"
Successfully applied user defined changes from .f2py_f2cmap
In file included from
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from
build/src.macosx-10.9-x86_64-3.6/./fortranobject.h:13,
from ./timestepper_advmodule.c:18:
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by "
"#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0,
from
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from
build/src.macosx-10.9-x86_64-3.6/./fortranobject.h:13,
from build/src.macosx-10.9-x86_64-3.6/./fortranobject.c:2:
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by "
"#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.macosx-10.9-x86_64-3.6/./fortranobject.c: In function
'format_def':
build/src.macosx-10.9-x86_64-3.6/./fortranobject.c:138:18: warning:
comparison between signed and unsigned integer expressions [-Wsign-compare]
if (size < sizeof(notalloc)) {
^
ld: warning: ignoring file
build/temp.macosx-10.9-x86_64-3.6/timestepper_adv.o, file was built for
unsupported file format ( 0x23 0x20 0x31 0x20 0x22 0x2E 0x2F 0x74 0x69
0x6D 0x65 0x73 0x74 0x65 0x70 0x70 ) which is not the architecture being
linked (x86_64): build/temp.macosx-10.9-x86_64-3.6/timestepper_adv.o
/bin/rm -f -r build timestepper_advmodule.c
(petsc) br146-244:qgsolver aponte$
Le 18/01/2018 à 20:23, Aurelien Ponte a écrit :
Thanks,
I corrected the two errors in the fortran code Lisandro spotted.
I added the -E option in the makefile:
F90="${FC}" F90FLAGS="${FC_FLAGS} -E" \
make now goes through and produce two files:
timestepper_adv.cpython-36m-darwin.so.dSYM
timestepper_adv.cpython-36m-darwin.so
I have not tested these libraries yet but will do soon.
Do you believe I am good to go?
Finally, I have several warning that may be of some interest, if you
have quick fixes, I am a taker !
/Users/aponte/.miniconda3/envs/petsc/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: #warning "Using deprecated NumPy API, disable it by "
"#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.macosx-10.9-x86_64-3.6/./fortranobject.c: In function
'format_def':
build/src.macosx-10.9-x86_64-3.6/./fortranobject.c:138:18: warning:
comparison between signed and unsigned integer expressions
[-Wsign-compare]
if (size < sizeof(notalloc)) {
^
ld: warning: ignoring file
build/temp.macosx-10.9-x86_64-3.6/timestepper_adv.o, file was built
for unsupported file format ( 0x23 0x20 0x31 0x20 0x22 0x2E 0x2F 0x74
0x69 0x6D 0x65 0x73 0x74 0x65 0x70 0x70 ) which is not the
architecture being linked (x86_64):
build/temp.macosx-10.9-x86_64-3.6/timestepper_adv.o
Le 18/01/2018 à 20:01, Lisandro Dalcin a écrit :
Line 71 is likely wrong, too, you likely meant:
do k=grd%zs,grd%ze
On 18 January 2018 at 21:59, Lisandro Dalcin <[email protected]> wrote:
On 18 January 2018 at 18:56, Aurelien Ponte
<[email protected]> wrote:
The code is found here:
https://github.com/apatlpo/qgsolver/tree/fwrapping/qgsolver
Your code is not valid Fortran, you cannot use brackets [] for
indexing in lines 80-90, you have to use parentheses ().
--
Lisandro Dalcin
============
Research Scientist
Computer, Electrical and Mathematical Sciences & Engineering (CEMSE)
Extreme Computing Research Center (ECRC)
King Abdullah University of Science and Technology (KAUST)
http://ecrc.kaust.edu.sa/
4700 King Abdullah University of Science and Technology
al-Khawarizmi Bldg (Bldg 1), Office # 0109
Thuwal 23955-6900, Kingdom of Saudi Arabia
http://www.kaust.edu.sa
Office Phone: +966 12 808-0459
--
Aurélien Ponte
Tel: (+33) 2 98 22 40 73
Fax: (+33) 2 98 22 44 96
UMR 6523, IFREMER
ZI de la Pointe du Diable
CS 10070
29280 Plouzané
