I made some changes to the falcon cluster environment. Please try the default git (i.e Without loading a module) and see if petsc will install correctly.
Thanks, Cormac. On Wed, Apr 4, 2018 at 5:09 PM, Fande Kong <fdkong...@gmail.com> wrote: > The default git gives me: > > *Could not execute "['git', 'rev-parse', '--git-dir']"* > > when I am configuring PETSc. > > The manually loaded *gits* work just fine. > > > Fande, > > > On Wed, Apr 4, 2018 at 5:04 PM, Garvey, Cormac T <cormac.gar...@inl.gov> > wrote: > >> I though it was fixed, yes I will look into it again. >> >> Do you get an error just doing a git clone on falcon1 and falcon2? >> >> On Wed, Apr 4, 2018 at 4:48 PM, Kong, Fande <fande.k...@inl.gov> wrote: >> >>> module load git/2.16.2-GCCcore-5.4.0" also works. >>> >>> Could you somehow make the default git work as well? Hence we do not >>> need to have this extra "module load for git" >>> >>> Fande, >>> >>> On Wed, Apr 4, 2018 at 4:43 PM, Kong, Fande <fande.k...@inl.gov> wrote: >>> >>>> Thanks, Cormac, >>>> >>>> *module load git/1.8.5.2-GCC-4.8.3 * >>>> >>>> works for me. >>>> >>>> Did not try "module load git/2.16.2-GCCcore-5.4.0" yet. >>>> >>>> I will try, and get it back here. >>>> >>>> >>>> >>>> Fande >>>> >>>> On Wed, Apr 4, 2018 at 4:39 PM, Garvey, Cormac T <cormac.gar...@inl.gov >>>> > wrote: >>>> >>>>> >>>>> We needed to rebuilt git on the INL falcon cluster because github >>>>> server changed such that it no longer accepted TLSv1. >>>>> >>>>> The default git on the falcon cluster /usr/bin/git is just a wrapper >>>>> script, so users would not need to load any modules to >>>>> use git. >>>>> >>>>> When you load load git on falcon1 or falcon2 does it still fail? >>>>> >>>>> module load git/2.16.2-GCCcore-5.4.0 >>>>> >>>>> Thanks, >>>>> Cormac. >>>>> >>>>> >>>>> >>>>> On Wed, Apr 4, 2018 at 4:28 PM, Kong, Fande <fande.k...@inl.gov> >>>>> wrote: >>>>> >>>>>> Hi Cormac, >>>>>> >>>>>> Do you know anything on "git"? How did you guys build git on the >>>>>> falcon1? The default git on Falcon1 does not work with petsc any more. >>>>>> >>>>>> >>>>>> Fande, >>>>>> >>>>>> >>>>>> >>>>>> On Wed, Apr 4, 2018 at 4:20 PM, Satish Balay <ba...@mcs.anl.gov> >>>>>> wrote: >>>>>> >>>>>>> Ok - I don't think I have access to this OS. >>>>>>> >>>>>>> And I see its from 2009 [sure its enterprise os - with regular >>>>>>> backport updates] >>>>>>> >>>>>>> But its wierd that you have such a new version of git at /usr/bin/git >>>>>>> >>>>>>> From what we know so far - the problem appears to be some bad >>>>>>> interaction of python-2.6 with this old OS [i.e old glibc etc..] - >>>>>>> and >>>>>>> this new git version [binary built locally or on a different OS and >>>>>>> installed locally ?]. >>>>>>> >>>>>>> Satish >>>>>>> >>>>>>> On Wed, 4 Apr 2018, Kong, Fande wrote: >>>>>>> >>>>>>> > moose]$ uname -a >>>>>>> > Linux falcon1 3.0.101-108.13-default #1 SMP Wed Oct 11 12:30:40 >>>>>>> UTC 2017 >>>>>>> > (294ccfe) x86_64 x86_64 x86_64 GNU/Linux >>>>>>> > >>>>>>> > >>>>>>> > moose]$ lsb_release -a >>>>>>> > LSB Version: >>>>>>> > core-2.0-noarch:core-3.2-noarch:core-4.0-noarch:core-2.0-x86 >>>>>>> _64:core-3.2-x86_64:core-4.0-x86_64:desktop-4.0-amd64:deskto >>>>>>> p-4.0-noarch:graphics-2.0-amd64:graphics-2.0-noarch:graphics >>>>>>> -3.2-amd64:graphics-3.2-noarch:graphics-4.0-amd64:graphics-4 >>>>>>> .0-noarch >>>>>>> > Distributor ID: SUSE LINUX >>>>>>> > Description: SUSE Linux Enterprise Server 11 (x86_64) >>>>>>> > Release: 11 >>>>>>> > Codename: n/a >>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> > On Wed, Apr 4, 2018 at 4:08 PM, Satish Balay <ba...@mcs.anl.gov> >>>>>>> wrote: >>>>>>> > >>>>>>> > > On Wed, 4 Apr 2018, Satish Balay wrote: >>>>>>> > > >>>>>>> > > > On Wed, 4 Apr 2018, Satish Balay wrote: >>>>>>> > > > >>>>>>> > > > > was your '2.16.2' version installed from source? >>>>>>> > > > >>>>>>> > > > >>> >>>>>>> > > > Checking for program /usr/bin/git...found >>>>>>> > > > Defined make macro "GIT" to "git" >>>>>>> > > > Executing: git --version >>>>>>> > > > stdout: git version 2.16.2 >>>>>>> > > > <<<< >>>>>>> > > > >>>>>>> > > > I gues its the OS default package >>>>>>> > > > >>>>>>> > > > >>>>> >>>>>>> > > > Machine platform: >>>>>>> > > > ('Linux', 'falcon1', '3.0.101-108.13-default', '#1 SMP Wed Oct >>>>>>> 11 >>>>>>> > > 12:30:40 UTC 2017 (294ccfe)', 'x86_64', 'x86_64') >>>>>>> > > > Python version: >>>>>>> > > > 2.6.9 (unknown, Aug 5 2016, 11:15:31) >>>>>>> > > > [GCC 4.3.4 [gcc-4_3-branch revision 152973]] >>>>>>> > > > <<<< >>>>>>> > > > >>>>>>> > > > What OS/version is on this machine? I can try reproducing in a >>>>>>> VM >>>>>>> > > >>>>>>> > > It is strange that the kernel is old [3.0 - perhaps LTS OS] , >>>>>>> python is >>>>>>> > > old [2.6] - but git is new? [2.16?] >>>>>>> > > >>>>>>> > > https://urldefense.proofpoint.com/v2/url?u=https-3A__ >>>>>>> > > mirrors.edge.kernel.org_pub_software_scm_git_&d=DwIBAg&c= >>>>>>> > > 54IZrppPQZKX9mLzcGdPfFD1hxrcB__aEkJFOKJFd00&r=DUUt3SRGI0_ >>>>>>> > > JgtNaS3udV68GRkgV4ts7XKfj2opmiCY&m=WF6ZxIh9Z9Hh2kYY0w70aNrgf >>>>>>> Picp6 >>>>>>> > > kgIh5BvezPiEY&s=KWMsO7XC0-pQuQ_mD03tNJWEpxSTATlZW_DmX0QofGw&e= >>>>>>> > > git-2.16.2.tar.gz 16-Feb-2018 >>>>>>> 17:48 >>>>>>> > > 7M >>>>>>> > > >>>>>>> > > Satish >>>>>>> > > >>>>>>> > >>>>>>> >>>>>>> >>>>>> >>>>> >>>>> >>>>> -- >>>>> Cormac Garvey >>>>> HPC Software Consultant >>>>> Scientific Computing >>>>> Idaho National Laboratory >>>>> Ph: 208-526-6294 >>>>> >>>>> >>>> >>> >> >> >> -- >> Cormac Garvey >> HPC Software Consultant >> Scientific Computing >> Idaho National Laboratory >> Ph: 208-526-6294 >> >> > -- Cormac Garvey HPC Software Consultant Scientific Computing Idaho National Laboratory Ph: 208-526-6294