i dont have anything for DMSetOptionsPrefix On Mon, Apr 9, 2018 at 4:55 PM, Manuel Valera <[email protected]> wrote:
> > > On Mon, Apr 9, 2018 at 4:53 PM, Matthew Knepley <[email protected]> wrote: > >> On Mon, Apr 9, 2018 at 7:52 PM, Manuel Valera <[email protected]> wrote: >> >>> Ok thanks, i'm learning more every day, >>> >>> I still get the same error, i am running with -dm_vec_type viennacl >>> -dm_mat_type aijviennacl -pc_type saviennacl >>> >> >> 1) Are you calling DMSetFromOptions()? >> > > Yes, i get: > > [valera@node50 Src]$ grep DMSetFromOptions *.f90 > DMDAmetrics.f90:call DMSetFromOptions(daDerivs,ierr) > dmdaobjs.f90: call DMSetFromOptions(daGrid,ierr) > dmdaobjs.f90: call DMSetFromOptions(daSingle,ierr) > dmdaobjs.f90: call DMSetFromOptions(daConstants,ierr) > dmdaobjs.f90: call DMSetFromOptions(daSgs,ierr) > dmdaobjs.f90: call DMSetFromOptions(daLaplacian,ierr) > dmdaobjs.f90: call DMSetFromOptions(daMetrics,ierr) > dmdaobjs.f90: call DMSetFromOptions(daCenters,ierr) > dmdaobjs.f90: call DMSetFromOptions(daPressureCoeffs,ierr) > dmdaobjs.f90: call DMSetFromOptions(daDivSgs,ierr) > dmdaobjs.f90: call DMSetFromOptions(daDummy,ierr) > dmdaobjs.f90: call DMSetFromOptions(daVelocities,ierr) > dmdaobjs.f90: call DMSetFromOptions(daScalars,ierr) > dmdaobjs.f90: call DMSetFromOptions(daDensity,ierr) > fileIO.f90: call DMSetFromOptions(daWriteCenters,ierr) > fileIO.f90: call DMSetFromOptions(daWriteUgrid,ierr) > fileIO.f90: call DMSetFromOptions(daWriteVgrid,ierr) > fileIO.f90: call DMSetFromOptions(daWriteWgrid,ierr) > romsmodule.f90: call DMSetFromOptions(daSeqEastWest_u,ierrp) > romsmodule.f90: call DMSetFromOptions(daSeqEastWest_v,ierrp) > romsmodule.f90: call DMSetFromOptions(daSeqEastWest_w,ierrp) > seamountbeamroms.f90: call DMSetFromOptions(daMinPlaneZ, > ierr) > > >> >> 2) Does your DM have a prefix? >> > > What does this mean? the one used in the KSPSolve is daDummy > > Thanks, > > > > >> >> Matt >> >> >>> The error: >>> >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #1 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #2 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #3 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #4 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #5 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> Finished setting up matrix objects >>> Exiting PrepareNetCDF >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #6 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #7 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #8 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #9 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.7096996307373047E-002 >>> PETSC_Solve_SSG: 1.7321825027465820E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #10 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #11 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #12 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #13 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.2702941894531250E-002 >>> PETSC_Solve_SSG: 1.2929439544677734E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #14 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #15 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #16 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #17 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.2219429016113281E-002 >>> PETSC_Solve_SSG: 1.2480735778808594E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #18 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #19 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #20 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #21 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.2894392013549805E-002 >>> PETSC_Solve_SSG: 1.3124227523803711E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #22 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #23 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #24 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #25 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.2183427810668945E-002 >>> PETSC_Solve_SSG: 1.2410402297973633E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #26 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #27 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #28 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #29 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.2546300888061523E-002 >>> PETSC_Solve_SSG: 1.2778043746948242E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #30 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #31 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #32 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #33 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.2255668640136719E-002 >>> PETSC_Solve_SSG: 1.2504816055297852E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #34 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #35 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #36 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #37 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.3138055801391602E-002 >>> PETSC_Solve_SSG: 1.3362646102905273E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #38 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #39 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #40 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #41 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.2072801589965820E-002 >>> PETSC_Solve_SSG: 1.2319087982177734E-002 >>> -.-.-.-.- >>> [0]PETSC ERROR: --------------------- Error Message >>> -------------------------------------------------------------- >>> [0]PETSC ERROR: No support for this operation for this object type >>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html >>> for trouble shooting. >>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9-13-g05d412b GIT >>> Date: 2018-04-09 08:39:52 -0500 >>> [0]PETSC ERROR: ./gcmBEAM on a cuda-debug named node50 by valera Mon >>> Apr 9 16:50:21 2018 >>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda-debug --download-mpich >>> --with-blaslapack-dir=/usr/lib64 COPTFLAGS=-O2 CXXOPTFLAGS=-O2 >>> FOPTFLAGS=-O2 --with-shared-libraries=1 --download-hypre --with-debugging=1 >>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>> --download-cusp --download-cusp-commit=116b090 >>> [0]PETSC ERROR: #42 PCSetUp_SAVIENNACL() line 47 in >>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>> [0]PETSC ERROR: #43 PCSetUp() line 923 in /home/valera/petsc/src/ksp/pc/ >>> interface/precon.c >>> [0]PETSC ERROR: #44 KSPSetUp() line 381 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> [0]PETSC ERROR: #45 KSPSolve() line 612 in /home/valera/petsc/src/ksp/ksp >>> /interface/itfunc.c >>> PETSC_Solve_Sol: 1.2498617172241211E-002 >>> PETSC_Solve_SSG: 1.2726306915283203E-002 >>> -.-.-.-.- >>> -.-.-.-.-.- >>> TMain_Loop: 1.1020996570587158 >>> -.-.-.-.-.- >>> WARNING! There are options you set that were not used! >>> WARNING! could be spelling mistake, etc! >>> >>> >>> On Mon, Apr 9, 2018 at 4:45 PM, Matthew Knepley <[email protected]> >>> wrote: >>> >>>> On Mon, Apr 9, 2018 at 7:27 PM, Manuel Valera <[email protected]> >>>> wrote: >>>> >>>>> On Mon, Apr 9, 2018 at 4:09 PM, Matthew Knepley <[email protected]> >>>>> wrote: >>>>> >>>>>> On Mon, Apr 9, 2018 at 6:12 PM, Manuel Valera <[email protected]> >>>>>> wrote: >>>>>> >>>>>>> Hello guys, >>>>>>> >>>>>>> I've made advances in my CUDA acceleration project, as you remember >>>>>>> i have a CFD model in need of better execution times. >>>>>>> >>>>>>> So far i have been able to solve the pressure system in the GPU and >>>>>>> the rest in serial, using PETSc only for this pressure solve, the >>>>>>> library i >>>>>>> got to work was ViennaCL. First question, do i still have to switch >>>>>>> installations to use either CUDA library? this was a suggestion before, >>>>>>> so >>>>>>> in order to use CUSP instead of ViennaCL, for example, i currently have >>>>>>> to >>>>>>> change installations, is this still the case? >>>>>>> >>>>>> >>>>>> I am not sure what that means exactly. However, you can build a PETSc >>>>>> with CUDA and ViennaCL support. The type of Vec/Mat is selected at >>>>>> runtime. >>>>>> >>>>> >>>>> Karl Rupp wrote in a previous email: >>>>> >>>>> * * Right now only one of {native CUDA, CUSP, ViennaCL} can be >>>>> activated at configure time. This will be fixed later this month.* >>>>> >>>>> I was asking if this was already solved in 3.9, >>>>> >>>> >>>> Karl knows better than I do. I thought that was fixed, but maybe not in >>>> this release. >>>> >>>> >>>>> >>>>> >>>>>> >>>>>> >>>>>>> Now, i started working in a fully parallelized version of the model, >>>>>>> which uses the DMs and DMDAs to distribute the arrays, if i try the same >>>>>>> flags as before i get an error saying "Currently only handles ViennaCL >>>>>>> matrices" when trying to solve for pressure, i get this is a feature >>>>>>> still >>>>>>> not implemented? what options do i have to solve pressure, or assign a >>>>>>> DMDA >>>>>>> array update to be done specifically in a GPU device? >>>>>>> >>>>>> >>>>>> If we can't see the error, we are just guessing. Please send the >>>>>> entire error message. >>>>>> >>>>> >>>>> Got it, I will paste the error at the end of this email >>>>> >>>> >>>> It is asking for a ViennaCL matrix. You must tell the DM to create one: >>>> >>>> -dm_mat_type aijviennacl >>>> >>>> >>>>> >>>>> >>>>>> >>>>>> Note, we only do linear algebra on the GPU, so none of the >>>>>> FormFunction/FormJacobian stuff for DMDA would be on the GPU. >>>>>> >>>>> >>>>> Yes, we only use it for linear algebra, e.g. solving a linear system >>>>> and updating an array with a problematic algorithm. >>>>> >>>>> >>>>> >>>>>> >>>>>> >>>>>>> I was thinking of using the VecScatterCreateToZero for a regular >>>>>>> vector, >>>>>>> >>>>>> >>>>>> Why do you want a serial vector? >>>>>> >>>>> >>>>> Because it looks live ViennaCL doesn't handle arrays created with >>>>> DMDAVec, it was just an idea >>>>> >>>> >>>> No, it just needs the right type. >>>> >>>> >>>>> >>>>> >>>>>> but then i would have to create a vector and copy the DMDAVec into it, >>>>>>> >>>>>> >>>>>> I do not understand what it means to copy the DM into the Vec. >>>>>> >>>>> >>>>> I meant copying a DMDAVec into a Vec object, the first is created with >>>>> a DMDA object for it's mapping across processors, >>>>> >>>> >>>> There is no such thing as a DMDAVec. Everything is just a Vec. >>>> >>>> Thanks, >>>> >>>> Matt >>>> >>>> >>>>> >>>>>> Thanks, >>>>>> >>>>>> Matt >>>>>> >>>>>> >>>>>>> is this accomplished with DMDAVecGetArrayReadF90 and then just copy? >>>>>>> do you think this will generate too much overhead? >>>>>>> >>>>>>> Thanks so much for your input, >>>>>>> >>>>>>> Manuel >>>>>>> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> What most experimenters take for granted before they begin their >>>>>> experiments is infinitely more interesting than any results to which >>>>>> their >>>>>> experiments lead. >>>>>> -- Norbert Wiener >>>>>> >>>>>> https://www.cse.buffalo.edu/~knepley/ >>>>>> <http://www.caam.rice.edu/~mk51/> >>>>>> >>>>> >>>>> The error happens when trying to use KSPSolve() for a vector made with >>>>> DMDAVec routines, the matrix is created without any DMDA routines >>>>> >>>>> Error: >>>>> >>>>> [0]PETSC ERROR: --------------------- Error Message >>>>> -------------------------------------------------------------- >>>>> [0]PETSC ERROR: No support for this operation for this object type >>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>>>> ocumentation/faq.html for trouble shooting. >>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.8.4-2418-gd9c423b >>>>> GIT Date: 2018-04-02 11:59:41 +0200 >>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda named node50 by valera Mon Apr 9 >>>>> 16:24:26 2018 >>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda --download-mpich >>>>> --download-fblaslapack COPTFLAGS=-O2 CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 >>>>> --with-shared-libraries=1 --download-hypre --with-debugging=no >>>>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>>>> --download-cusp >>>>> [0]PETSC ERROR: #1 PCSetUp_SAVIENNACL() line 47 in >>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>>>> [0]PETSC ERROR: #2 PCSetUp() line 924 in /home/valera/petsc/src/ksp/pc/ >>>>> interface/precon.c >>>>> [0]PETSC ERROR: #3 KSPSetUp() line 381 in >>>>> /home/valera/petsc/src/ksp/ksp/interface/itfunc.c >>>>> [0]PETSC ERROR: --------------------- Error Message >>>>> -------------------------------------------------------------- >>>>> [0]PETSC ERROR: No support for this operation for this object type >>>>> [0]PETSC ERROR: Currently only handles ViennaCL matrices >>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>>>> ocumentation/faq.html for trouble shooting. >>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.8.4-2418-gd9c423b >>>>> GIT Date: 2018-04-02 11:59:41 +0200 >>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda named node50 by valera Mon Apr 9 >>>>> 16:24:26 2018 >>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda --download-mpich >>>>> --download-fblaslapack COPTFLAGS=-O2 CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 >>>>> --with-shared-libraries=1 --download-hypre --with-debugging=no >>>>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>>>> --download-cusp >>>>> [0]PETSC ERROR: #4 PCSetUp_SAVIENNACL() line 47 in >>>>> /home/valera/petsc/src/ksp/pc/impls/saviennaclcuda/saviennacl.cu >>>>> [0]PETSC ERROR: #5 PCSetUp() line 924 in /home/valera/petsc/src/ksp/pc/ >>>>> interface/precon.c >>>>> Finished setting up matrix objects >>>>> Exiting PrepareNetCDF >>>>> [0]PETSC ERROR: ------------------------------ >>>>> ------------------------------------------ >>>>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, >>>>> probably memory access out of range >>>>> [0]PETSC ERROR: Try option -start_in_debugger or >>>>> -on_error_attach_debugger >>>>> [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/d >>>>> ocumentation/faq.html#valgrind >>>>> [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac >>>>> OS X to find memory corruption errors >>>>> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, >>>>> and run >>>>> [0]PETSC ERROR: to get more information on the crash. >>>>> [0]PETSC ERROR: --------------------- Error Message >>>>> -------------------------------------------------------------- >>>>> [0]PETSC ERROR: Signal received >>>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/d >>>>> ocumentation/faq.html for trouble shooting. >>>>> [0]PETSC ERROR: Petsc Development GIT revision: v3.8.4-2418-gd9c423b >>>>> GIT Date: 2018-04-02 11:59:41 +0200 >>>>> [0]PETSC ERROR: ./gcmBEAM on a cuda named node50 by valera Mon Apr 9 >>>>> 16:24:26 2018 >>>>> [0]PETSC ERROR: Configure options PETSC_ARCH=cuda --download-mpich >>>>> --download-fblaslapack COPTFLAGS=-O2 CXXOPTFLAGS=-O2 FOPTFLAGS=-O2 >>>>> --with-shared-libraries=1 --download-hypre --with-debugging=no >>>>> --with-cuda=1 --CUDAFLAGS=-arch=sm_60 --download-hypre --download-viennacl >>>>> --download-cusp >>>>> [0]PETSC ERROR: #6 User provided function() line 0 in unknown file >>>>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >>>>> [unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=59 >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>> >>>> >>>> -- >>>> What most experimenters take for granted before they begin their >>>> experiments is infinitely more interesting than any results to which their >>>> experiments lead. >>>> -- Norbert Wiener >>>> >>>> https://www.cse.buffalo.edu/~knepley/ <http://www.caam.rice.edu/~mk51/> >>>> >>> >>> >> >> >> -- >> What most experimenters take for granted before they begin their >> experiments is infinitely more interesting than any results to which their >> experiments lead. >> -- Norbert Wiener >> >> https://www.cse.buffalo.edu/~knepley/ <http://www.caam.rice.edu/~mk51/> >> > >
