Re: [petsc-users] Nonconforming object sizes in axpy

Wed, 27 Feb 2019 16:00:13 -0800

Here is the error message and please find an example attached. 
thanks for the efforts !
 
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: No support for this operation for this object type
[0]PETSC ERROR: Mat type elemental
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1681-g73e1f9d014  GIT Date: 2019-02-24 19:52:00 +0100
[0]PETSC ERROR: ./a.out on a  named tono-hpc1 by marius Thu Feb 28 08:56:48 2019
[0]PETSC ERROR: Configure options --prefix=/home/marius/prog/petsc/intel_openmpi_openmp_mkl_dbg_with_slepc --with-fortran-kernels=0 --with-64-bit-indices=0 --CC=mpicc --COPTFLAGS="-g -O0 -qopenmp -std=c11" --CXX=mpicxx --CXXOPTFLAGS="-g -O0 -qopenmp -std=c++14" --FC=mpif90 --FOPTFLAGS="-g -O0 -qopenmp -traceback " --with-mpi=1 --with-x=0 --download-parmetis=1 --download-metis=1 --download-superlu_dist=1 --download-superlu_dist-commit=93a9aa53142253f2a56891e09c6f950d250ae251 --download-superlu_dist-cmake-arguments=-Denable_openmp=TRUE --download-hwloc=1 --download-sowing=1 --with-openmp=0 --with-pthread=0 --download-elemental=1 --download-elemental-commit=de7b5bea1abf5f626b91582f742cf99e2e551bff --with-cxx-dialect=c++11 --with-scalar-type=complex --with-debugging=1 --with-valgrind=0 --with-blaslapack-lib=" -L/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_openmpi_lp64 -liomp5 -lpthread -lm -ldl" --with-scalapack-lib=" -L/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_openmpi_lp64 -liomp5 -lpthread -lm -ldl" --with-mkl_pardiso-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_cpardiso-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_sparse-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_sparse_optimize-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-valgrind=1
[0]PETSC ERROR: #1 MatGetRow() line 570 in /home/marius/prog/petsc/git/petsc/src/mat/interface/matrix.c
[0]PETSC ERROR: #2 MatAXPY_Basic_Preallocate() line 95 in /home/marius/prog/petsc/git/petsc/src/mat/utils/axpy.c
[0]PETSC ERROR: #3 MatAXPY() line 51 in /home/marius/prog/petsc/git/petsc/src/mat/utils/axpy.c
[1]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[1]PETSC ERROR: No support for this operation for this object type
[1]PETSC ERROR: Mat type elemental
[1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[1]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1681-g73e1f9d014  GIT Date: 2019-02-24 19:52:00 +0100
[1]PETSC ERROR: ./a.out on a  named tono-hpc1 by marius Thu Feb 28 08:56:48 2019
[1]PETSC ERROR: Configure options --prefix=/home/marius/prog/petsc/intel_openmpi_openmp_mkl_dbg_with_slepc --with-fortran-kernels=0 --with-64-bit-indices=0 --CC=mpicc --COPTFLAGS="-g -O0 -qopenmp -std=c11" --CXX=mpicxx --CXXOPTFLAGS="-g -O0 -qopenmp -std=c++14" --FC=mpif90 --FOPTFLAGS="-g -O0 -qopenmp -traceback " --with-mpi=1 --with-x=0 --download-parmetis=1 --download-metis=1 --download-superlu_dist=1 --download-superlu_dist-commit=93a9aa53142253f2a56891e09c6f950d250ae251 --download-superlu_dist-cmake-arguments=-Denable_openmp=TRUE --download-hwloc=1 --download-sowing=1 --with-openmp=0 --with-pthread=0 --download-elemental=1 --download-elemental-commit=de7b5bea1abf5f626b91582f742cf99e2e551bff --with-cxx-dialect=c++11 --with-scalar-type=complex --with-debugging=1 --with-valgrind=0 --with-blaslapack-lib=" -L/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_openmpi_lp64 -liomp5 -lpthread -lm -ldl" --with-scalapack-lib=" -L/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_openmpi_lp64 -liomp5 -lpthread -lm -ldl" --with-mkl_pardiso-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_cpardiso-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_sparse-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_sparse_optimize-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-valgrind=1
[1]PETSC ERROR: #1 MatGetRow() line 570 in /home/marius/prog/petsc/git/petsc/src/mat/interface/matrix.c
[1]PETSC ERROR: #2 MatAXPY_Basic_Preallocate() line 95 in /home/marius/prog/petsc/git/petsc/src/mat/utils/axpy.c
[1]PETSC ERROR: #3 MatAXPY() line 51 in /home/marius/prog/petsc/git/petsc/src/mat/utils/axpy.c
[2]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[2]PETSC ERROR: No support for this operation for this object type
[2]PETSC ERROR: Mat type elemental
[2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[2]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1681-g73e1f9d014  GIT Date: 2019-02-24 19:52:00 +0100
[2]PETSC ERROR: ./a.out on a  named tono-hpc1 by marius Thu Feb 28 08:56:48 2019
[2]PETSC ERROR: Configure options --prefix=/home/marius/prog/petsc/intel_openmpi_openmp_mkl_dbg_with_slepc --with-fortran-kernels=0 --with-64-bit-indices=0 --CC=mpicc --COPTFLAGS="-g -O0 -qopenmp -std=c11" --CXX=mpicxx --CXXOPTFLAGS="-g -O0 -qopenmp -std=c++14" --FC=mpif90 --FOPTFLAGS="-g -O0 -qopenmp -traceback " --with-mpi=1 --with-x=0 --download-parmetis=1 --download-metis=1 --download-superlu_dist=1 --download-superlu_dist-commit=93a9aa53142253f2a56891e09c6f950d250ae251 --download-superlu_dist-cmake-arguments=-Denable_openmp=TRUE --download-hwloc=1 --download-sowing=1 --with-openmp=0 --with-pthread=0 --download-elemental=1 --download-elemental-commit=de7b5bea1abf5f626b91582f742cf99e2e551bff --with-cxx-dialect=c++11 --with-scalar-type=complex --with-debugging=1 --with-valgrind=0 --with-blaslapack-lib=" -L/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_openmpi_lp64 -liomp5 -lpthread -lm -ldl" --with-scalapack-lib=" -L/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_openmpi_lp64 -liomp5 -lpthread -lm -ldl" --with-mkl_pardiso-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_cpardiso-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_sparse-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_sparse_optimize-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-valgrind=1
[2]PETSC ERROR: #1 MatGetRow() line 570 in /home/marius/prog/petsc/git/petsc/src/mat/interface/matrix.c
[2]PETSC ERROR: #2 MatAXPY_Basic_Preallocate() line 95 in /home/marius/prog/petsc/git/petsc/src/mat/utils/axpy.c
[2]PETSC ERROR: #3 MatAXPY() line 51 in /home/marius/prog/petsc/git/petsc/src/mat/utils/axpy.c
[3]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[3]PETSC ERROR: No support for this operation for this object type
[3]PETSC ERROR: Mat type elemental
[3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[3]PETSC ERROR: Petsc Development GIT revision: v3.10.3-1681-g73e1f9d014  GIT Date: 2019-02-24 19:52:00 +0100
[3]PETSC ERROR: ./a.out on a  named tono-hpc1 by marius Thu Feb 28 08:56:48 2019
[3]PETSC ERROR: Configure options --prefix=/home/marius/prog/petsc/intel_openmpi_openmp_mkl_dbg_with_slepc --with-fortran-kernels=0 --with-64-bit-indices=0 --CC=mpicc --COPTFLAGS="-g -O0 -qopenmp -std=c11" --CXX=mpicxx --CXXOPTFLAGS="-g -O0 -qopenmp -std=c++14" --FC=mpif90 --FOPTFLAGS="-g -O0 -qopenmp -traceback " --with-mpi=1 --with-x=0 --download-parmetis=1 --download-metis=1 --download-superlu_dist=1 --download-superlu_dist-commit=93a9aa53142253f2a56891e09c6f950d250ae251 --download-superlu_dist-cmake-arguments=-Denable_openmp=TRUE --download-hwloc=1 --download-sowing=1 --with-openmp=0 --with-pthread=0 --download-elemental=1 --download-elemental-commit=de7b5bea1abf5f626b91582f742cf99e2e551bff --with-cxx-dialect=c++11 --with-scalar-type=complex --with-debugging=1 --with-valgrind=0 --with-blaslapack-lib=" -L/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_openmpi_lp64 -liomp5 -lpthread -lm -ldl" --with-scalapack-lib=" -L/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_openmpi_lp64 -liomp5 -lpthread -lm -ldl" --with-mkl_pardiso-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_cpardiso-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_sparse-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-mkl_sparse_optimize-dir=/home/marius/intel/compilers_and_libraries_2019.1.144/linux/mkl --with-valgrind=1
[3]PETSC ERROR: #1 MatGetRow() line 570 in /home/marius/prog/petsc/git/petsc/src/mat/interface/matrix.c
[3]PETSC ERROR: #2 MatAXPY_Basic_Preallocate() line 95 in /home/marius/prog/petsc/git/petsc/src/mat/utils/axpy.c
[3]PETSC ERROR: #3 MatAXPY() line 51 in /home/marius/prog/petsc/git/petsc/src/mat/utils/axpy.c
 

Von: "Stefano Zampini" <[email protected]>
An: "Marius Buerkle" <[email protected]>
Cc: "Matthew Knepley" <[email protected]>, "PETSc users list" <[email protected]>
Betreff: Re: [petsc-users] Nonconforming object sizes in axpy


> On Feb 27, 2019, at 3:25 PM, Marius Buerkle <[email protected]> wrote:
>
> Ok. I also tried without openmp which gave the same error.
> The segfault left aside, is MatAXPY supposed to work when Y is of type ELEMENTAL and X of type MATMPIAIJ ? It worked before but now it stops with mat elemental not supported.
>

I cannot find the error line that says Not supported for elemental.
The error PETSc is raising in the log you sent is with respect to the nonconforming object sizes (which BTW are correct).
Could you please send the backtrace (without openmp) for the error regarding “mat elemental not supported”?



>
>> Von: "Stefano Zampini" <[email protected]>
>> An: "Marius Buerkle" <[email protected]>
>> Cc: "Matthew Knepley" <[email protected]>, "PETSc users list" <[email protected]>
>> Betreff: Re: [petsc-users] Nonconforming object sizes in axpy
>>
>> If you check ALL ERROR CODES by doing
>> ierr = _AnyPetscCall_();CHKERRQ(ierr);
>> The code will stop at the first error
>>
>> I see you are using openmp. Probably this is causing the problem, I don’t know what to say without a MWE.
>>
>>
>>> On Feb 25, 2019, at 10:50 PM, Marius Buerkle <[email protected]> wrote:
>>>
>>> <error_output.tar.gz>
>>
>>
 

Attachment: output.tar.gz
Description: Binary data

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