Any reason for using petsc-3.10.5 and not latest petsc-3.11? I suggest starting from scatch and rebuilding.
And if you still have issues - send corresponding configure.log and make.log Satish On Thu, 22 Aug 2019, Lailai Zhu via petsc-users wrote: > sorry, Satish, > > but it does not seem to solve the problem. > > best, > lailai > > On 8/22/19 12:41 AM, Balay, Satish wrote: > > Can you run 'make' again and see if this error goes away? > > > > Satish > > > > On Wed, 21 Aug 2019, Lailai Zhu via petsc-users wrote: > > > >> hi, Satish, > >> i tried to do it following your suggestion, i get the following errors when > >> installing. > >> here is my configuration, > >> > >> any ideas? > >> > >> best, > >> lailai > >> > >> ./config/configure.py --with-c++-support --known-mpi-shared-libraries=1 > >> --with-batch=0 --with-mpi=1 --with-debugging=0 CXXOPTFLAGS="-g -O3" > >> COPTFLAGS="-O3 -ip -axCORE-AVX2 -xSSE4.2" FOPTFLAGS="-O3 -ip -axCORE-AVX2 > >> -xSSE4.2" --with-blas-lapack-dir=/opt/intel/mkl --download-elemental=1 > >> --download-blacs=1 --download-scalapack=1 --download-hypre=1 > >> --download-plapack=1 --with-cc=mpicc --with-cxx=mpic++ --with-fc=mpifort > >> --download-amd=1 --download-anamod=1 --download-blopex=1 > >> --download-dscpack=1 --download-sprng=1 --download-superlu=1 > >> --with-cxx-dialect=C++11 --download-metis --download-parmetis > >> > >> > >> > >> pet3.10.5-intel19-mpich3.3/obj/mat/impls/sbaij/seq/sbaij.o: In function > >> `MatCreate_SeqSBAIJ': > >> sbaij.c:(.text+0x1bc45): undefined reference to > >> `MatConvert_SeqSBAIJ_Elemental' > >> ld: pet3.10.5-intel19-mpich3.3/obj/mat/impls/sbaij/seq/sbaij.o: relocation > >> R_X86_64_PC32 against undefined hidden symbol > >> `MatConvert_SeqSBAIJ_Elemental' > >> can not be used when making a shared object > >> ld: final link failed: Bad value > >> gmakefile:86: recipe for target > >> 'pet3.10.5-intel19-mpich3.3/lib/libpetsc.so.3.10.5' failed > >> make[2]: *** [pet3.10.5-intel19-mpich3.3/lib/libpetsc.so.3.10.5] Error 1 > >> make[2]: Leaving directory > >> '/usr/nonroot/petsc/petsc3.10.5_intel19_mpich3.3' > >> ........................../petsc3.10.5_intel19_mpich3.3/lib/petsc/conf/rules:81: > >> recipe for target 'gnumake' failed > >> make[1]: *** [gnumake] Error 2 > >> make[1]: Leaving directory > >> '/usr/nonroot/petsc/petsc3.10.5_intel19_mpich3.3' > >> **************************ERROR************************************* > >> Error during compile, check > >> pet3.10.5-intel19-mpich3.3/lib/petsc/conf/make.log > >> Send it and pet3.10.5-intel19-mpich3.3/lib/petsc/conf/configure.log to > >> petsc-ma...@mcs.anl.gov > >> > >> On 8/21/19 10:58 PM, Balay, Satish wrote: > >>> To install elemental - you use: --download-elemental=1 [not > >>> --download-elemental-commit=v0.87.7] > >>> > >>> Satish > >>> > >>> > >>> On Wed, 21 Aug 2019, Lailai Zhu via petsc-users wrote: > >>> > >>>> hi, dear petsc developers, > >>>> > >>>> I am having a problem when using the external solver elemental. > >>>> I installed petsc3.10.5 version with the flag > >>>> --download-elemental-commit=v0.87.7 > >>>> the installation seems to be ok. However, it seems that i may not be able > >>>> to use the elemental solver though. > >>>> > >>>> I followed this page > >>>> https://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/Mat/MATELEMENTAL.html > >>>> to interface the elemental solver, namely, > >>>> MatSetType(A,MATELEMENTAL); > >>>> or set it via the command line '*-mat_type elemental*', > >>>> > >>>> in either case, i will get the following error, > >>>> > >>>> [0]PETSC ERROR: --------------------- Error Message > >>>> -------------------------------------------------------------- > >>>> [0]PETSC ERROR: Unknown type. Check for miss-spelling or missing package: > >>>> http://www.mcs.anl.gov/petsc/documentation/installation.html#external > >>>> [0]PETSC ERROR: Unknown Mat type given: elemental > >>>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > >>>> for > >>>> trouble shooting. > >>>> [0]PETSC ERROR: Petsc Release Version 3.10.5, Mar, 28, 2019 > >>>> > >>>> May i ask whether there will be a way or some specific petsc versions > >>>> that > >>>> are > >>>> able to use the elemental solver? > >>>> > >>>> Thanks in advance, > >>>> > >>>> best, > >>>> lailai > >>>> > >> > >