attached zip file has the same/old configure.log Can you use PETSC_ARCH=arch-test - so that the old build files are not reused, and resend the new configure.log
Satish On Tue, 27 Aug 2019, Fande Kong via petsc-users wrote: > No, I hit exactly the same error using your script. > > Thanks, > > Fande, > > On Tue, Aug 27, 2019 at 2:54 PM Balay, Satish <[email protected]> wrote: > > > On Tue, 27 Aug 2019, Fande Kong via petsc-users wrote: > > > > > Hi All, > > > > > > I was trying to compile PETSc with "--download-superlu_dist" using an > > intel > > > compiler. I have explored with different options, but did not get PETSc > > > built successfully so far. Any help would be appreciated. > > > > > > The log file is attached. > > > > I attempted one and that worked. > > > > Can you try the same on your machine and see if it still gives errors? > > > > Satish > > > > ----- > > > > -bash-4.2$ ./configure --with-cc=mpiicc --with-fc=mpiifort > > --with-cxx=mpiicpc --with-debugging=no -with-blas-lapack-dir=$MKLROOT > > --with-cxx-dialect=C++11 --download-superlu_dist=1 --download-metis > > --download-parmetis --download-cmake > > > > =============================================================================== > > Configuring PETSc to compile on your system > > > > > > =============================================================================== > > =============================================================================== > > ***** WARNING: Using default optimization C > > flags -g -O3 You might > > consider manually setting optimal optimization flags for your system with > > COPTFLAGS="optimization flags" see > > config/examples/arch-*-opt.py for examples > > > > =============================================================================== > > > > =============================================================================== > > ***** WARNING: Using default C++ optimization > > flags -g -O3 You might > > consider manually setting optimal optimization flags for your system with > > CXXOPTFLAGS="optimization flags" see > > config/examples/arch-*-opt.py for examples > > > > =============================================================================== > > > > =============================================================================== > > ***** WARNING: Using default FORTRAN > > optimization flags -g -O3 You > > might consider manually setting optimal optimization flags for your system > > with FOPTFLAGS="optimization flags" see > > config/examples/arch-*-opt.py for examples > > > > =============================================================================== > > > > =============================================================================== > > It appears you do not have valgrind installed > > on your system. We HIGHLY > > recommend you install it from www.valgrind.org > > Or install valgrind-devel or equivalent using your > > package manager. Then rerun > > ./configure > > > > > > =============================================================================== > > > > =============================================================================== > > Trying to download git:// > > https://bitbucket.org/petsc/pkg-sowing.git for SOWING > > > > =============================================================================== > > > > =============================================================================== > > Running configure on SOWING; this may take > > several minutes > > > > =============================================================================== > > > > =============================================================================== > > Running make on SOWING; this may take several > > minutes > > =============================================================================== > > > > =============================================================================== > > Running make install on SOWING; this may take > > several minutes > > =============================================================================== > > > > =============================================================================== > > Trying to download > > https://cmake.org/files/v3.9/cmake-3.9.6.tar.gz for CMAKE > > > > > > =============================================================================== > > > > =============================================================================== > > Running configure on CMAKE; this may take > > several minutes > > =============================================================================== > > > > =============================================================================== > > Running make on CMAKE; this may take several > > minutes > > > > =============================================================================== > > > > =============================================================================== > > Running make install on CMAKE; this may take > > several minutes > > > > =============================================================================== > > > > =============================================================================== > > Trying to download git:// > > https://bitbucket.org/petsc/pkg-metis.git for METIS > > > > =============================================================================== > > > > =============================================================================== > > Configuring METIS with cmake, this may take > > several minutes > > =============================================================================== > > > > =============================================================================== > > Compiling and installing METIS; this may take > > several minutes > > =============================================================================== > > > > =============================================================================== > > Trying to download git:// > > https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS > > > > =============================================================================== > > > > =============================================================================== > > Configuring PARMETIS with cmake, this may > > take several minutes > > > > =============================================================================== > > > > =============================================================================== > > Compiling and installing PARMETIS; this may > > take several minutes > > > > =============================================================================== > > > > =============================================================================== > > Trying to download git:// > > https://github.com/xiaoyeli/superlu_dist for SUPERLU_DIST > > > > =============================================================================== > > > > =============================================================================== > > Configuring SUPERLU_DIST with cmake, this may > > take several minutes > > > > =============================================================================== > > > > =============================================================================== > > Compiling and installing SUPERLU_DIST; this > > may take several minutes > > > > =============================================================================== > > Compilers: > > > > C Compiler: mpiicc -fPIC -wd1572 -g -O3 > > C++ Compiler: mpiicpc -wd1572 -g -O3 -fPIC -std=c++11 > > Fortran Compiler: mpiifort -fPIC -g -O3 > > Linkers: > > Shared linker: mpiicc -shared -fPIC -wd1572 -g -O3 > > Dynamic linker: mpiicc -shared -fPIC -wd1572 -g -O3 > > make: > > BLAS/LAPACK: > > -Wl,-rpath,/home/intel/19u3/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 > > -L/home/intel/19u3/compilers_and_libraries_2019.3.199/linux/mkl/lib/intel64 > > -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmkl_def -lpthread > > MPI: > > cmake: > > X: > > Library: -lX11 > > pthread: > > metis: > > Includes: -I/home/balay/petsc/arch-linux2-c-opt/include > > Library: -Wl,-rpath,/home/balay/petsc/arch-linux2-c-opt/lib > > -L/home/balay/petsc/arch-linux2-c-opt/lib -lmetis > > parmetis: > > Includes: -I/home/balay/petsc/arch-linux2-c-opt/include > > Library: -Wl,-rpath,/home/balay/petsc/arch-linux2-c-opt/lib > > -L/home/balay/petsc/arch-linux2-c-opt/lib -lparmetis > > SuperLU_DIST: > > Includes: -I/home/balay/petsc/arch-linux2-c-opt/include > > Library: -Wl,-rpath,/home/balay/petsc/arch-linux2-c-opt/lib > > -L/home/balay/petsc/arch-linux2-c-opt/lib -lsuperlu_dist > > Arch: > > mkl_sparse: > > mkl_sparse_optimize: > > sowing: > > PETSc: > > PETSC_ARCH: arch-linux2-c-opt > > PETSC_DIR: /home/balay/petsc > > Scalar type: real > > Precision: double > > Clanguage: C > > Integer size: 32 > > shared libraries: enabled > > Memory alignment: 16 > > > > xxx=========================================================================xxx > > Configure stage complete. Now build PETSc libraries with (gnumake build): > > make PETSC_DIR=/home/balay/petsc PETSC_ARCH=arch-linux2-c-opt all > > > > xxx=========================================================================xxx > > -bash-4.2$ uname -a > > Linux isdp001.cels.anl.gov 3.10.0-957.27.2.el7.x86_64 #1 SMP Mon Jul 29 > > 17:46:05 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux > > -bash-4.2$ > > > > >
