Hi Barry,
With both --download-sowing-cc= and --download-sowing-cxx= specified, it
can be configured now.
Thanks as always for all your help,
Danyang
On 2019-09-10 11:19 a.m., Smith, Barry F. wrote:
Ahh, sorry it also needs the C++ compiler provided with
--download-sowing-cxx= something
On Sep 10, 2019, at 1:11 PM, Danyang Su <[email protected]> wrote:
Sorry I forgot to attached the log file.
Attached are the log files using the following configuration:
./configure COPTFLAGS="-march=native -O2" CXXOPTFLAGS="-march=native -O2"
FOPTFLAGS="-march=native -O2" --with-scalapack=1
--with-scalapack-lib="[/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so,/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so]"
--download-parmetis=1 --download-metis=1 --download-ptscotch=1 --download-fblaslapack=1 --download-hypre=1
--download-superlu_dist=1 --with-hdf5=1
--with-hdf5-dir=/scinet/niagara/software/2019a/opt/intel-2019.1-intelmpi-2019.1/hdf5-mpi/1.10.4 --download-zlib=1
--download-szlib=1 --download-ctetgen=1 --with-debugging=0 --with-cxx-dialect=C++11
--with-mpi-dir=/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mpi/intel64
--download-sowing-cc=/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/bin/intel64/icc
Thanks,
Danyang
On 2019-09-10 11:03 a.m., Smith, Barry F. wrote:
Please send the configure.log file when run with
--download-sowing-cc=yourCcompiler and also
$PETSC_ARCH/externalpackages/git.sowing/config.log this will tell us why it is
rejecting the C compiler.
Barry
On Sep 10, 2019, at 12:43 PM, Danyang Su via petsc-users
<[email protected]> wrote:
Dear All,
I am trying to install petsc-dev on a cluster with intel compiler. However, the
configuration get stuck on SOWING.
Error running configure on SOWING: Could not execute "['./configure
--prefix=/home/m/min3p/danyangs/soft/petsc/petsc-dev/linux-intel-opt']":
checking for ranlib... ranlib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ar... ar
checking for gcc... no
checking for cc... no
checking for cl.exe... noconfigure: error: in
`/gpfs/fs1/home/m/min3p/danyangs/soft/petsc/petsc-dev/linux-intel-opt/externalpackages/git.sowing':
configure: error: no acceptable C compiler found in $PATH
See `config.log' for more details
Actually the C compiler is there.
If I use GNU compiler, there is no problem. I also tried to use different
sowing configuration as discussed on
https://lists.mcs.anl.gov/pipermail/petsc-dev/2018-June/023070.html, but
without success.
The configuration is
./configure COPTFLAGS="-march=native -O2" CXXOPTFLAGS="-march=native -O2"
FOPTFLAGS="-march=native -O2" --with-scalapack=1
--with-scalapack-lib="[/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so,/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so]"
--download-parmetis=1 --download-metis=1 --download-ptscotch=1 --download-fblaslapack=1 --download-hypre=1
--download-superlu_dist=1 --with-hdf5=1
--with-hdf5-dir=/scinet/niagara/software/2019a/opt/intel-2019.1-intelmpi-2019.1/hdf5-mpi/1.10.4 --download-zlib=1
--download-szlib=1 --download-ctetgen=1 --with-debugging=0 --with-cxx-dialect=C++11
--with-mpi-dir=/scinet/niagara/intel/2019.1/compilers_and_libraries_2019.1.144/linux/mpi/intel64 -download-sowing
Any suggestion on this?
Thanks and regards,
danyang
<configure.log><sowing-config.log>
