I have no idea whats different with UBUNTU MUMPS. You can try debugging it as the error message suggests.
My suggestion is to stick with petsc-3.13 and --download-mumps. You can use ubuntu packages for software where API is more consistent - like blas/lapack, MPICH/OpenMPI Satish On Sat, 25 Apr 2020, [email protected] wrote: > Hi, > > I am trying to compile PETSc, using the precompiled Mumps in Ubuntu. The > available Mumps version is 5.1.2, so I use PETSc 3.11 (for 3.13 I would > require mumps 5.2.1, not available as a precompiled package). > > The packages are: > > $ dpkg -l | grep mumps > ii libmumps-5.1.2:amd64 5.1.2-4 > amd64 Direct linear systems solver - parallel shared > libraries > ii libmumps-dev:amd64 5.1.2-4 > amd64 Direct linear systems solver - parallel > development files > ii libmumps-ptscotch-5.1.2:amd64 5.1.2-4 > amd64 Direct linear systems solver - PTScotch-version > shared libraries > ii libmumps-ptscotch-dev:amd64 5.1.2-4 > amd64 Direct linear systems solver - PTScotch-version > development files > ii libmumps-scotch-5.1.2:amd64 5.1.2-4 > amd64 Direct linear systems solver - Scotch-version > shared libraries > ii libmumps-scotch-dev:amd64 5.1.2-4 > amd64 Direct linear systems solver - Scotch-version > development files > ii libmumps-seq-5.1.2:amd64 5.1.2-4 > amd64 Direct linear systems solver - non-parallel > shared libraries > ii libmumps-seq-dev:amd64 5.1.2-4 > amd64 Direct linear systems solver - non-parallel > development files > > So I configure with > > $ ./configure --with-cc=mpicc --with-fc=mpif90 -with-cxx=mpicxx > --prefix=/home/santiago/usr/local --with-make-np=10 > --with-shared-libraries > --with-packages-download-dir=/home/santiago/Documents/installers/petsc > --download-fblaslapack --with-mumps --with-scalapack --with-debugging=0 > COPTFLAGS='-O -O3 -march=native -mtune=native' FOPTFLAGS='-O -O3 > -march=native -mtune=native' CXXOPTFLAGS='-O -O3 -march=native > -mtune=native' --force > > works fine. But > > $ make PETSC_DIR=/home/santiago/usr/local PETSC_ARCH="" test > Running test examples to verify correct installation > Using PETSC_DIR=/home/santiago/usr/local and PETSC_ARCH= > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 > MPI process > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 > MPI processes > See http://www.mcs.anl.gov/petsc/documentation/faq.html > lid velocity = 0.0016, prandtl # = 1., grashof # = 1. > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, > probably memory access out of range > [0]PETSC ERROR: Try option -start_in_debugger or > -on_error_attach_debugger > [0]PETSC ERROR: or see > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac > OS X to find memory corruption errors > [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, > and run > [0]PETSC ERROR: to get more information on the crash. > [0]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [0]PETSC ERROR: Signal received > [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > for trouble shooting. > [0]PETSC ERROR: Petsc Release Version 3.11.4, Sep, 28, 2019 > [0]PETSC ERROR: ./ex19 on a named isaiasPrecision-7820 by santiago Sat > Apr 25 09:52:01 2020 > [1]PETSC ERROR: > ------------------------------------------------------------------------ > [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, > probably memory access out of range > [1]PETSC ERROR: Try option -start_in_debugger or > -on_error_attach_debugger > [1]PETSC ERROR: or see > http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind > [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac > OS X to find memory corruption errors > [1]PETSC ERROR: configure using --with-debugging=yes, recompile, link, > and run > [1]PETSC ERROR: to get more information on the crash. > [1]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [1]PETSC ERROR: Signal received > [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html > for trouble shooting. > [1]PETSC ERROR: Petsc Release Version 3.11.4, Sep, 28, 2019 > [1]PETSC ERROR: ./ex19 on a named isaiasPrecision-7820 by santiago Sat > Apr 25 09:52:01 2020 > [1]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 > -with-cxx=mpicxx --prefix=/home/santiago/usr/local --with-make-np=10 > --with-shared-libraries > --with-packages-download-dir=/home/santiago/Documents/installers/petsc > --download-fblaslapack --with-mumps --with-scalapack --with-debugging=0 > COPTFLAGS="-O -O3 -march=native -mtune=native" FOPTFLAGS="-O -O3 > -march=native -mtune=native" CXXOPTFLAGS="-O -O3 -march=native > -mtune=native" --force > [1]PETSC ERROR: #1 User provided function() line 0 in unknown file > [0]PETSC ERROR: Configure options --with-cc=mpicc --with-fc=mpif90 > -with-cxx=mpicxx --prefix=/home/santiago/usr/local --with-make-np=10 > --with-shared-libraries > --with-packages-download-dir=/home/santiago/Documents/installers/petsc > --download-fblaslapack --with-mumps --with-scalapack --with-debugging=0 > COPTFLAGS="-O -O3 -march=native -mtune=native" FOPTFLAGS="-O -O3 > -march=native -mtune=native" CXXOPTFLAGS="-O -O3 -march=native > -mtune=native" --force > [0]PETSC ERROR: #1 User provided function() line 0 in unknown file > > -------------------------------------------------------------------------- > MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD > with errorcode 59. > > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > You may or may not see output from other processes, depending on > exactly when Open MPI kills them. > > -------------------------------------------------------------------------- > [isaiasPrecision-7820:09935] 1 more process has sent help message > help-mpi-api.txt / mpi-abort > [isaiasPrecision-7820:09935] Set MCA parameter > "orte_base_help_aggregate" to 0 to see all help / error messages > > fails. As mentioned in > https://www.mcs.anl.gov/petsc/documentation/faq.html#PetscOptionsInsertFile > (even if not the same error) I checked > > $ ping `hostname` > > It works fine. > As a reference, a PETSc version that is compiled with ... --download-mumps > --download-scalapack ... works fine. > > How can I compile and successfully check PETSc, using the precompiled Mumps > in Ubuntu? > > Thanks >
