Please copy/paste complete [compile] commands from: src/snes/tutorials/ make clean make ex19 make ex5f
Likely the link command used in your code is different than what is used here - triggering errors. Satish On Thu, 21 May 2020, Alfredo Jaramillo wrote: > hello Satish, no the tests seem to be ok altough some error related to mpd. > > ==============THE TESTS=================== > > Running check examples to verify correct installation > Using PETSC_DIR=/scratch/simulreserv/softwares/petsc-3.13.0 and > PETSC_ARCH=x64-O3-3.13-intel2016-64 > Possible error running C/C++ src/snes/tutorials/ex19 with 1 MPI process > See http://www.mcs.anl.gov/petsc/documentation/faq.html > mpiexec_sdumont11: cannot connect to local mpd > (/tmp/mpd2.console_alfredo.jaramillo); possible causes: > 1. no mpd is running on this host > 2. an mpd is running but was started without a "console" (-n option) > Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI processes > See http://www.mcs.anl.gov/petsc/documentation/faq.html > mpiexec_sdumont11: cannot connect to local mpd > (/tmp/mpd2.console_alfredo.jaramillo); possible causes: > 1. no mpd is running on this host > 2. an mpd is running but was started without a "console" (-n option) > 1,5c1,3 > < lid velocity = 0.0016, prandtl # = 1., grashof # = 1. > < 0 SNES Function norm 0.0406612 > < 1 SNES Function norm 4.12227e-06 > < 2 SNES Function norm 6.098e-11 > < Number of SNES iterations = 2 > --- > > mpiexec_sdumont11: cannot connect to local mpd > (/tmp/mpd2.console_alfredo.jaramillo); possible causes: > > 1. no mpd is running on this host > > 2. an mpd is running but was started without a "console" (-n option) > /scratch/simulreserv/softwares/petsc-3.13.0/src/snes/tutorials > Possible problem with ex19 running with hypre, diffs above > ========================================= > 1,9c1,3 > < lid velocity = 0.0625, prandtl # = 1., grashof # = 1. > < 0 SNES Function norm 0.239155 > < 0 KSP Residual norm 0.239155 > < 1 KSP Residual norm < 1.e-11 > < 1 SNES Function norm 6.81968e-05 > < 0 KSP Residual norm 6.81968e-05 > < 1 KSP Residual norm < 1.e-11 > < 2 SNES Function norm < 1.e-11 > < Number of SNES iterations = 2 > --- > > mpiexec_sdumont11: cannot connect to local mpd > (/tmp/mpd2.console_alfredo.jaramillo); possible causes: > > 1. no mpd is running on this host > > 2. an mpd is running but was started without a "console" (-n option) > /scratch/simulreserv/softwares/petsc-3.13.0/src/snes/tutorials > Possible problem with ex19 running with mumps, diffs above > ========================================= > Possible error running Fortran example src/snes/tutorials/ex5f with 1 MPI > process > See http://www.mcs.anl.gov/petsc/documentation/faq.html > mpiexec_sdumont11: cannot connect to local mpd > (/tmp/mpd2.console_alfredo.jaramillo); possible causes: > 1. no mpd is running on this host > 2. an mpd is running but was started without a "console" (-n option) > Completed test examples > > =============================== > > I entered in src/snes/tutorials/ and executed "make ex5f". The binary exf5 > was created > > > > On Thu, May 21, 2020 at 6:37 PM Satish Balay <[email protected]> wrote: > > > Do you get this error when building PETSc examples [C and/or fortran] - > > when you build them with the corresponding petsc makefile? > > > > Can you send the log of the example compiles? > > > > Satish > > > > --- > > > > [the attachment got deleted - don't know by who..] > > > > DENIAL OF SERVICE ALERT > > > > A denial of service protection limit was exceeded. The file has been > > removed. > > Context: 'configure.log.7z' > > Reason: The data size limit was exceeded > > Limit: 10 MB > > Ticket Number : 0c9c-5ec6-f30f-0001 > > > > > > For further information, contact your system administrator. > > Copyright 1999-2014 McAfee, Inc. > > All Rights Reserved. > > http://www.mcafee.com > > > > > > > > On Thu, 21 May 2020, Alfredo Jaramillo wrote: > > > > > dear PETSc team, > > > > > > I have compiled PETSc with a 2016 version of the intel compilers. The > > > installation went well, but when I tried to compile my code the following > > > error appears in the final step of compilation (linking with ld) > > > > > > ../build/linux_icc/obj_linux_icc_opt/main.o: In function `main': > > > main.c:(.text+0x0): multiple definition of `main' > > > > > /opt/intel/parallel_studio_xe_2016_update2/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64/libifcore_pic.a(for_main.o):for_main.c:(.text+0x0): > > > first defined here > > > > > /opt/intel/parallel_studio_xe_2016_update2/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64/libifcore_pic.a(for_main.o): > > > In function `main': > > > for_main.c:(.text+0x3e): undefined reference to `MAIN__' > > > > > > I searched for this and I found that the option "-nofor_main" should be > > > added when compiling with ifort, but our code is written only in C an > > C++. > > > The FORTRAN compiler is used when PETSc compiles MUMPS. So I dont know if > > > this would work for this case. > > > > > > The configure.log file and the log of the compilation giving the error > > are > > > attached to this message. These logs were obtained in a cluster, I'm > > > getting the same error on my personal computer with a 2020 version of the > > > Intel Parallel Studio. > > > > > > thank you for any help on this > > > Alfredo > > > > > > > >
