Yes, that's it, thanks for the fast help! Regards,
Roland Am 19.01.21 um 14:55 schrieb Matthew Knepley: > On Tue, Jan 19, 2021 at 7:28 AM Roland Richter <[email protected] > <mailto:[email protected]>> wrote: > > Hei, > > I just encountered an issue which I can not solve on my own. I > wrote a test program on my development machine, and compilation > works fine, but when trying to compile it on the production > machine compilation fails with > > I believe your production machine has PETSc version < 3.14, since > MatDenseGetArrayWrite() was not introduced until 3,14. > > Thanks, > > Matt > > /[ 25%] Building CXX object > CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o// > ///share/apps/software/OpenMPI/3.1.3-gcccuda-2019a/bin/mpicxx > -DBOOST_NO_AUTO_PTR -DUSE_CUDA -DUSE_PHYSICS_VARIABLES > -Dtest_program_EXPORTS > -I~/work_directory/full_physics/Test-Controller/library/include > -I~/work_directory/full_physics/physics_variables/include > -I~/local_opt_GCC7/interp2d/include -I/usr/include/eigen3 > -I/share/apps/software/Compiler/GCC/8.2.0-2.31.1/GSL/2.5/include > > -I/share/apps/software/MPI/intel/2018.3.222-GCC-7.3.0-2.30/impi/2018.3.222/imkl/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/include > -isystem ~/local_opt_GCC7/dealii/include -isystem > ~/local_opt_GCC7/dealii/include/deal.II/bundled -isystem > /share/apps/software/Core/icc/2019.1.144-GCC-8.2.0-2.31.1/tbb/include > -isystem ~/local_opt_GCC7/boost/include -isystem > ~/local_opt_GCC7/petsc/include -isystem > ~/local_opt_GCC7/trilinos/include -isystem > ~/local_opt_GCC7/arrayfire/include -isystem > /share/apps/software/imkl/2019.5.281-iimpi-2019b/mkl/include > -isystem ~/local_opt_GCC7/suitesparse/include -isystem > > /share/apps/software/MPI/GCC-CUDA/8.2.0-2.31.1-10.1.105/OpenMPI/3.1.3/HDF5/1.10.5/include > -isystem > /share/apps/software/Compiler/GCCcore/8.2.0/zlib/1.2.11/include > -isystem > /share/apps/software/Compiler/GCCcore/8.2.0/Szip/2.1.1/include > -isystem > /share/apps/software/Compiler/GCC/8.2.0-2.31.1/CUDA/10.1.105/include > -isystem > /share/apps/software/Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3/include > -isystem ~/local_opt_GCC7/adol-c/include -isystem > ~/local_opt_GCC7/p4est/include -isystem > ~/local_opt_GCC7/slepc/include -isystem > ~/local_opt_GCC7/armadillo/include -isystem > > /share/apps/software/MPI/GCC-CUDA/8.2.0-2.31.1-10.1.105/OpenMPI/3.1.3/FFTW/3.3.8/include > -march=native -fopenmp-simd -fPIC -flto -march=native -fopenmp > -O2 -funroll-loops -funroll-all-loops -fstrict-aliasing -DMKL_LP64 > -m64 -O3 -DNDEBUG -fPIC -pedantic -fPIC -Wall -Wextra > -Wmissing-braces -Woverloaded-virtual -Wpointer-arith > -Wsign-compare -Wswitch -Wsynth -Wwrite-strings -Wno-placement-new > -Wno-literal-suffix -Wno-psabi -Wno-class-memaccess -fopenmp-simd > -march=native -mavx -Wno-unused-local-typedefs -O2 -funroll-loops > -funroll-all-loops -fstrict-aliasing -Werror -flto -std=gnu++17 > -MD -MT > CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o -MF > CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o.d -o > CMakeFiles/test_program.dir/source/core/tester_helper.cpp.o -c > > ~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp: > In member function 'void tester_helper::nonlinear_step(double&, > double)':// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:765:5: > error: 'MatDenseGetArrayWrite' was not declared in this scope// > // MatDenseGetArrayWrite (petsc_field.pc_spectral, &write_ptr);// > // ^~~~~~~~~~~~~~~~~~~~~// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:765:5: > note: suggested alternative: 'MatDenseGetArrayRead'// > // MatDenseGetArrayWrite (petsc_field.pc_spectral, &write_ptr);// > // ^~~~~~~~~~~~~~~~~~~~~// > // MatDenseGetArrayRead// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:772:5: > error: 'MatDenseRestoreArrayWrite' was not declared in this scope// > // MatDenseRestoreArrayWrite (petsc_field.pc_spectral, > &write_ptr);// > // ^~~~~~~~~~~~~~~~~~~~~~~~~// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:772:5: > note: suggested alternative: 'MatDenseRestoreArrayRead'// > // MatDenseRestoreArrayWrite (petsc_field.pc_spectral, > &write_ptr);// > // ^~~~~~~~~~~~~~~~~~~~~~~~~// > // MatDenseRestoreArrayRead// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp: > In member function 'void > tester_helper::nonlinear_step_material_transition()':// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:870:4: > error: 'MatDenseGetArrayWrite' was not declared in this scope// > // MatDenseGetArrayWrite(split_mat, &write_mat_ptr);// > // ^~~~~~~~~~~~~~~~~~~~~// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:870:4: > note: suggested alternative: 'MatDenseGetArrayRead'// > // MatDenseGetArrayWrite(split_mat, &write_mat_ptr);// > // ^~~~~~~~~~~~~~~~~~~~~// > // MatDenseGetArrayRead// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:874:4: > error: 'MatDenseRestoreArrayWrite' was not declared in this scope// > // MatDenseRestoreArrayWrite(split_mat, &write_mat_ptr);// > // ^~~~~~~~~~~~~~~~~~~~~~~~~// > > //~/work_directory/full_physics/Test-Controller/library/source/core/tester_helper.cpp:874:4: > note: suggested alternative: 'MatDenseRestoreArrayRead'// > // MatDenseRestoreArrayWrite(split_mat, &write_mat_ptr);// > // ^~~~~~~~~~~~~~~~~~~~~~~~~// > // MatDenseRestoreArrayRead/ > > Where does that error come from, and how can I fix it/circumvent > it? I compile the program using gcc 8.2.0 (including mpi-wrappers) > on the production machine, and with gcc 9.3.1 on the dev machine. > > Thanks, > > regards, > > Roland > > > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which > their experiments lead. > -- Norbert Wiener > > https://www.cse.buffalo.edu/~knepley/ > <http://www.cse.buffalo.edu/~knepley/>
