Please send the file /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017//lib/petsc/conf/petscvariables
Satish On Wed, 14 Apr 2021, TAY wee-beng wrote: > Hi, > > I redo the installation: > > /*Now to install the libraries do:*//* > *//*make PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 install*//* > *//*=========================================*//* > *//* > *//*DELL-T7610+wtay@DELL-T7610 > /cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0*//* > *//*$ make PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 install*//* > *//**** Using PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 ****//* > *//**** Installing PETSc at prefix location: > /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017 ****//* > *//*====================================*//* > *//*Install complete.*//* > *//*Now to check if the libraries are working do (in current directory):*//* > *//*make PETSC_DIR=/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017 > PETSC_ARCH="" check*//* > *//*====================================*//* > *//*/usr/bin/make --no-print-directory -f makefile > PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 > PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 mpi4py-install > petsc4py-install libmesh-install mfem-insta*//* > *//*ll slepc-install hpddm-install amrex-install bamg-install*//* > *//*make[2]: Nothing to be done for 'mpi4py-install'.*//* > *//*make[2]: Nothing to be done for 'petsc4py-install'.*//* > *//*make[2]: Nothing to be done for 'libmesh-install'.*//* > *//*make[2]: Nothing to be done for 'mfem-install'.*//* > *//*make[2]: Nothing to be done for 'slepc-install'.*//* > *//*make[2]: Nothing to be done for 'hpddm-install'.*//* > *//*make[2]: Nothing to be done for 'amrex-install'.*//* > *//*make[2]: Nothing to be done for 'bamg-install'.*//* > */ > DELL-T7610+wtay@DELL-T7610 > /cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > > I ran the check: > > /*$ make PETSC_DIR=/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017 > PETSC_ARCH="" check*//* > *//*/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017//lib/petsc/conf/petscvariables:5: > *** missing separator. Stop.*/ > > Why is this happening? > > Thank you very much. > > Yours sincerely, > > ================================================ > TAY Wee-Beng 郑伟明 (Zheng Weiming) > Personal research webpage: _http://tayweebeng.wixsite.com/website_ > Youtube research showcase: _https://goo.gl/PtvdwQ_ > linkedin: _https://www.linkedin.com/in/tay-weebeng_ > ================================================ > > On 14/4/2021 6:01 pm, Mark Adams wrote: > > You have PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 > > I think you use PETSC_ARCH="" for installed libs. > > When you do the install it will tell you exactly what to run to run "check". > > You might double check that . > > Mark > > > > On Wed, Apr 14, 2021 at 4:10 AM TAY wee-beng <zon...@gmail.com > > <mailto:zon...@gmail.com>> wrote: > > > > Hi Barry, > > > > Ops, which dir should I run /*export PETSC_DIR=`pwd`*//* > > */ > > > > Maybe I ran it wrongly initially at where the lib is stored: > > /*/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/*//* > > */ > > > > My source is at > > > > /*/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0*/ > > > > Now I ran: > > > > /*export PETSC_DIR=`pwd`*//* > > *//*cd src/ksp/ksp/tutorials/*//* > > *//*make ex2f*/ > > > > > > /*/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/lib/petsc/bin/win32fe/win32fe > > ifort -MD -Z7 -fpp -MD -Z7 -fpp > > -I/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/include > > -I/cygdrive/d/wtay/Downloads/S*//* > > *//*ource_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/include > > -I/cygdrive/c/Program\ Files\ > > \(x86\)/Intel/oneAPI/mpi/latest/include ex2f.F90 > > -R/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.*//* > > *//*15.0_win64_impi_vs2017/lib > > > > -L/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/lib > > -R/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/lib > > -L/cygdrive/d/Lib/petsc-3.15.0_win64_impi*//* > > *//*_vs2017/lib -lpetsc -lflapack -lfblas /cygdrive/c/Program\ > > Files\ \(x86\)/Intel/oneAPI/mpi/latest/lib/debug/impi.lib > > /cygdrive/c/Program\ Files\ > > \(x86\)/Intel/oneAPI/mpi/latest/lib/debug/impicxx.lib /cygdrive/c/*//* > > *//*Program\ Files\ > > \(x86\)/Intel/oneAPI/mpi/latest/lib/libmpi_ilp64.lib Gdi32.lib > > User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib -o ex2f*//* > > *//*ifort: command line warning #10006: ignoring unknown option > > > > '/R/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/lib'*//* > > *//*ifort: command line warning #10006: ignoring unknown option > > '/R/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/lib'*//* > > *//*ex2f.F90(80): error #6405: The same named entity from > > different modules and/or program units cannot be referenced. > > [PETSC_COMM_WORLD]*//* > > *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//* > > *//*-------------------------^*//* > > *//*ex2f.F90(80): error #7112: This actual argument must not be > > the name of a procedure. [PETSC_COMM_WORLD]*//* > > *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//* > > *//*-------------------------^*//* > > *//*ex2f.F90(81): error #6405: The same named entity from > > different modules and/or program units cannot be referenced. > > [PETSC_COMM_WORLD]*//* > > *//* call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)*//* > > *//*-------------------------^*//* > > *//*ex2f.F90(81): error #7112: This actual argument must not be > > the name of a procedure. [PETSC_COMM_WORLD]*//* > > *//* call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)*//* > > *//*-------------------------^*//* > > *//*ex2f.F90(93): error #6405: The same named entity from > > different modules and/or program units cannot be referenced. > > [PETSC_COMM_WORLD]*//* > > *//* call MatCreate(PETSC_COMM_WORLD,A,ierr)*//* > > *//*---------------------^*//* > > *//*ex2f.F90(93): error #7112: This actual argument must not be > > the name of a procedure. [PETSC_COMM_WORLD]*//* > > *//* call MatCreate(PETSC_COMM_WORLD,A,ierr)*//* > > *//*---------------------^*//* > > *//*ex2f.F90(159): error #6405: The same named entity from > > different modules and/or program units cannot be referenced. > > [PETSC_COMM_WORLD]*//* > > *//* call > > VecCreateMPI(PETSC_COMM_WORLD,PETSC_DECIDE,m*n,u,ierr)*//* > > *//*------------------------^*//* > > *//*ex2f.F90(159): error #7112: This actual argument must not be > > the name of a procedure. [PETSC_COMM_WORLD]*//* > > *//* call > > VecCreateMPI(PETSC_COMM_WORLD,PETSC_DECIDE,m*n,u,ierr)*//* > > *//*------------------------^*//* > > *//*ex2f.F90(171): error #6405: The same named entity from > > different modules and/or program units cannot be referenced. > > [PETSC_COMM_WORLD]*//* > > *//* call PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)*//* > > *//*--------------------------------^*//* > > *//*ex2f.F90(171): error #7112: This actual argument must not be > > the name of a procedure. [PETSC_COMM_WORLD]*//* > > *//* call PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)*//* > > *//*--------------------------------^*//* > > *//*ex2f.F90(193): error #6405: The same named entity from > > different modules and/or program units cannot be referenced. > > [PETSC_COMM_WORLD]*//* > > *//* call KSPCreate(PETSC_COMM_WORLD,ksp,ierr)*//* > > *//*---------------------^*//* > > *//*ex2f.F90(193): error #7112: This actual argument must not be > > the name of a procedure. [PETSC_COMM_WORLD]*//* > > *//* call KSPCreate(PETSC_COMM_WORLD,ksp,ierr)*//* > > *//*---------------------^*//* > > *//*ex2f.F90(319): error #6405: The same named entity from > > different modules and/or program units cannot be referenced. > > [PETSC_COMM_WORLD]*//* > > *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//* > > *//*-------------------------^*//* > > *//*ex2f.F90(319): error #7112: This actual argument must not be > > the name of a procedure. [PETSC_COMM_WORLD]*//* > > *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//* > > *//*-------------------------^*//* > > *//*compilation aborted for ex2f.F90 (code 1)*//* > > *//*make: *** > > > > [/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/lib/petsc/conf/test:23: > > ex2f] Error 1*/ > > > > > > I have also attached the "/*make check*/" output. Seems like > > there's problem with fortran compile. > > > > Thank you very much. > > > > Yours sincerely, > > > > ================================================ > > TAY Wee-Beng 郑伟明 (Zheng Weiming) > > Personal research webpage: _http://tayweebeng.wixsite.com/website > > <http://tayweebeng.wixsite.com/website>_ > > Youtube research showcase: _https://goo.gl/PtvdwQ > > <https://goo.gl/PtvdwQ>_ > > linkedin: _https://www.linkedin.com/in/tay-weebeng > > <https://www.linkedin.com/in/tay-weebeng>_ > > ================================================ > > > > On 14/4/2021 3:47 pm, Barry Smith wrote: > >> > >> Please send configure.log and make.log and the results of "make > >> check" so we have the details on the build process. > >> > >>> /*No rule to make target > >>> > >>> '/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutori*//*als/lib/petsc/conf/test'. > >>> Stop.*/ > >>> > >> Looks funny; it does not seem to separate the PETSc directory > >> from its configuration directory appropriately. > >> > >> Are you sure > >> > >>> /*export PETSC_DIR=`pwd`*//* > >>> *//*export PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017*/ > >>> > >> are run in the appropriate directory so that PETSC_DIR is correct. > >> > >> Barry > >> > >> > >> > >> > >> > >> > >>> On Apr 14, 2021, at 2:20 AM, TAY wee-beng <zon...@gmail.com > >>> <mailto:zon...@gmail.com>> wrote: > >>> > >>> Hi Mark, > >>> > >>> I'm not sure what's wrong. > >>> > >>> In VS2017 + Intel oneAPI, > >>> > >>> even after adding the full path: > >>> > >>> #include > >>> > >>> <D:/Lib/petsc-3.15.0_win64_impi_vs2017/include/petsc/finclude/petscksp.h> > >>> > >>> I got a new error: > >>> > >>> /*Compiling with Intel® Fortran Compiler Classic 2021.2.0 > >>> [Intel(R) 64]...*//* > >>> *//*ex2f.F90*//* > >>> *//*petscksp.h(8): #error: can't find include file: > >>> petsc/finclude/petscpc.h*//* > >>> *//*ex2f : error PRJ0019: A tool returned an error code*/ > >>> > >>> Note that I have also specified the include dir in the properties: > >>> > >>> > >>> /*Debug/;$(PETSC_DIR);$(PETSC_DIR)/include;$(I_MPI_ONEAPI_ROOT)/include*/ > >>> > >>> I also tried in cygwin: > >>> > >>> /*export PETSC_DIR=`pwd`*//* > >>> *//*export PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017*//* > >>> *//*make ex2f*/ > >>> > >>> I got the error: > >>> > >>> /*$ make ex2f*//* > >>> *//*makefile:41: > >>> > >>> /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutorials/lib/petsc/conf/te*//*st: > >>> No such file or directory*//* > >>> *//*make: *** No rule to make target > >>> > >>> '/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutori*//*als/lib/petsc/conf/test'. > >>> Stop.*/ > >>> > >>> Somehow it just doesn't work. Building the library has no > >>> problem though. > >>> > >>> I wonder what's wrong. > >>> > >>> > >>> Thank you very much. > >>> > >>> Yours sincerely, > >>> > >>> ================================================ > >>> TAY Wee-Beng 郑伟明 (Zheng Weiming) > >>> Personal research webpage: > >>> _http://tayweebeng.wixsite.com/website > >>> <http://tayweebeng.wixsite.com/website>_ > >>> Youtube research showcase: _https://goo.gl/PtvdwQ > >>> <https://goo.gl/PtvdwQ>_ > >>> linkedin: _https://www.linkedin.com/in/tay-weebeng > >>> <https://www.linkedin.com/in/tay-weebeng>_ > >>> ================================================ > >>> > >>> On 14/4/2021 9:31 am, Mark Adams wrote: > >>>> PETSc has changed Fortran syntax since v3.9. You should > >>>> upgrade. Look at examples for how to use modules etc. > >>>> > >>>> > >>>> /*Compiling with Intel® Fortran Compiler Classic 2021.2.0 > >>>> [Intel(R) 64]...*//* > >>>> *//*global.F90*//* > >>>> *//*global.F90(3): #error: can't find include file: > >>>> petsc/finclude/petsc.h*//* > >>>> *//*global.F90(937): #error: can't find include file: > >>>> petsc/finclude/petsc.h*/ > >>>> > >>>> > >>>> It looks like you might not have your PETSC_ARCH variable set. > >>>> You should get a full path to /finclude/petsc.h. Look at the > >>>> compile line. > >>>> > >>>> There are PETSc examples that you you can make to see an > >>>> example of a correct make. For example, > >>>> > cd petsc/src/ksp/ksp/tutorials > >>>> > > make ex2f > >>>> > >>>> should make an executable and you can look at the compile and > >>>> link lines, and compare to what you are using. > >>>> > >>>> Mark > >>>> > >>>> > >>>> -- > >>>> > >>>> Thank you very much. > >>>> > >>>> Yours sincerely, > >>>> > >>>> ================================================ > >>>> TAY Wee-Beng 郑伟明 (Zheng Weiming) > >>>> Personal research webpage: > >>>> _http://tayweebeng.wixsite.com/website > >>>> <http://tayweebeng.wixsite.com/website>_ > >>>> Youtube research showcase: _https://goo.gl/PtvdwQ > >>>> <https://goo.gl/PtvdwQ>_ > >>>> linkedin: _https://www.linkedin.com/in/tay-weebeng > >>>> <https://www.linkedin.com/in/tay-weebeng>_ > >>>> ================================================ > >>>> > >> >
