Hello, I have problem loading the msh4 file generated from neper. The mesh format is 4.1 The error is: [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Unexpected data in file [0]PETSC ERROR: File is not a valid Gmsh file, expecting $Entities [0]PETSC ERROR: WARNING! There are option(s) set that were not used! Could be the program crashed before they were used or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-g value: test.msh4 [0]PETSC ERROR: Option left: name:-l value: tensionX.load [0]PETSC ERROR: Option left: name:-m value: material.yaml [0]PETSC ERROR: Option left: name:-n value: numerics.yaml [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.18.5, unknown [0]PETSC ERROR: DAMASK_mesh on a gfortran named mamc57x by work Mon Nov 27 21:50:06 2023 [0]PETSC ERROR: Configure options --with-mpi-f90module-visibility=0 --download-hdf5 --with-hdf5-fortran-bindings=1 --download-fftw --download-mpich --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-fblaslapack=1 --download-ml --download-mumps --download-scalapack --download-hypre --download-zlib [0]PETSC ERROR: #1 GmshExpect() at /home/work/petsc/src/dm/impls/plex/plexgmsh.c:270 [0]PETSC ERROR: #2 DMPlexCreateGmsh() at /home/work/petsc/src/dm/impls/plex/plexgmsh.c:1548 [0]PETSC ERROR: #3 DMPlexCreateGmshFromFile() at /home/work/petsc/src/dm/impls/plex/plexgmsh.c:1433 [0]PETSC ERROR: #4 DMPlexCreateFromFile() at /home/work/petsc/src/dm/impls/plex/plexcreate.c:5207 [0]PETSC ERROR: #5 /home/work/DAMASK/src/mesh/discretization_mesh.f90:112 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see https://petsc.org/release/faq/#valgrind and https://petsc.org/release/faq/ [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: No error traceback is available, the problem could be in the main program. application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 [unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=59 The file does contain the $Entities section (file attached). Has anyone encountered this before?
Regards, Sharan P.S Sorry for the earlier mail that was sent to the incorrect mailing list. ----------------------------------------------- Max-Planck-Institut für Eisenforschung GmbH Max-Planck-Straße 1 D-40237 Düsseldorf Handelsregister B 2533 Amtsgericht Düsseldorf Geschäftsführung Prof. Dr. Gerhard Dehm Prof. Dr. Jörg Neugebauer Prof. Dr. Dierk Raabe Dr. Kai de Weldige Ust.-Id.-Nr.: DE 11 93 58 514 Steuernummer: 105 5891 1000 ------------------------------------------------- Please consider that invitations and e-mails of our institute are only valid if they end with [email protected]. If you are not sure of the validity please contact [email protected] Bitte beachten Sie, dass Einladungen zu Veranstaltungen und E-Mails aus unserem Haus nur mit der Endung [email protected] gültig sind. In Zweifelsfällen wenden Sie sich bitte an [email protected] ------------------------------------------------- Stay up to date and follow us on LinkedIn, Twitter and YouTube. Max-Planck-Institut für Eisenforschung GmbH Max-Planck-Straße 1 D-40237 Düsseldorf Handelsregister B 2533 Amtsgericht Düsseldorf Geschäftsführung Prof. Dr. Gerhard Dehm Prof. Dr. Jörg Neugebauer Prof. Dr. Dierk Raabe Dr. Kai de Weldige Ust.-Id.-Nr.: DE 11 93 58 514 Steuernummer: 105 5891 1000 Please consider that invitations and e-mails of our institute are only valid if they end with …@mpie.de. If you are not sure of the validity please contact [email protected] Bitte beachten Sie, dass Einladungen zu Veranstaltungen und E-Mails aus unserem Haus nur mit der Endung …@mpie.de gültig sind. In Zweifelsfällen wenden Sie sich bitte an [email protected] -------------------------------------------------
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