On Thu, Jan 18, 2024 at 3:08 PM Matthew Knepley <knep...@gmail.com> wrote:
> On Thu, Jan 18, 2024 at 1:20 PM Mark Adams <mfad...@lbl.gov> wrote: > >> I had this working at one point. >> >> Should I add PetscViewerHDF5PushTimestepping? >> I don't create a viewer now, but I could make one. >> > > That will make it work. The real fix would be to check at swarm.c:45 to > see whether timestepping is set. > Did you fix this? I do see PetscCall(PetscViewerHDF5SetTimestep(viewer, seqnum)); at swarm.c:45 But, I still need to comment out the check to get this to work. Thanks, Mark > Thanks, > > Matt > > >> Thanks, >> Mark >> >> >> On Thu, Jan 18, 2024 at 11:26 AM Matthew Knepley <knep...@gmail.com> >> wrote: >> >>> On Thu, Jan 18, 2024 at 10:08 AM Mark Adams <mfad...@lbl.gov> wrote: >>> >>>> I am trying to view a DMSwarm with: -weights_view hdf5:part.h5 >>>> >>>> Vec f; >>>> PetscCall(DMSetOutputSequenceNumber(sw, 0, 0.0)); >>>> PetscCall(DMSwarmCreateGlobalVectorFromField(sw, "w_q", &f)); >>>> PetscCall(PetscObjectSetName((PetscObject)f, "particle weights")); >>>> PetscCall(VecViewFromOptions(f, NULL, "-weights_view")); >>>> PetscCall(DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &f)); >>>> >>>> And I get this error. I had this working once and did not set >>>> PetscViewerHDF5PushTimestepping, so I wanted to check. >>>> >>> >>> We probably were not checking then. We might have to check there when we >>> set the timestep. >>> >>> Thanks, >>> >>> Matt >>> >>> >>>> Thanks, >>>> Mark >>>> >>>> >>>> [0]PETSC ERROR: Object is in wrong state >>>> [0]PETSC ERROR: Timestepping has not been pushed yet. Call >>>> PetscViewerHDF5PushTimestepping() first >>>> [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the >>>> program crashed before usage or a spelling mistake, etc! >>>> [0]PETSC ERROR: Option left: name:-options_left (no value) source: >>>> command line >>>> [0]PETSC ERROR: See >>>> https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!cD7sluQj9NiJty0xU3K76VpLTY-Rrg5Yt76rcjqqqRBJrORnOfs8HUpFGI3GWx5NmacCoQMG4Rzh9rws_R_xRvs$ >>>> for trouble >>>> shooting. >>>> [0]PETSC ERROR: Petsc Development GIT revision: >>>> v3.20.3-461-g585a01bd688 GIT Date: 2024-01-16 23:32:45 +0000 >>>> [0]PETSC ERROR: ./ex30k on a arch-macosx-gnu-O named MarksMac-302.local >>>> by markadams Thu Jan 18 10:05:53 2024 >>>> [0]PETSC ERROR: Configure options CFLAGS="-g >>>> -Wno-deprecated-declarations " CXXFLAGS="-g -Wno-deprecated-declarations " >>>> COPTFLAGS=-O CXXOPTFLAGS=-O --with-cc=/usr/local/opt/llvm/bin/clang >>>> --with-cxx=/usr/local/opt/llvm/bin/clang++ --download-mpich >>>> --with-strict-petscerrorcode --download-triangle=1 --with-debugging=0 >>>> --download-hdf5=1 PETSC_ARCH=arch-macosx-gnu-O >>>> [0]PETSC ERROR: #1 PetscViewerHDF5SetTimestep() at >>>> /Users/markadams/Codes/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c:990 >>>> [0]PETSC ERROR: #2 VecView_Swarm_HDF5_Internal() at >>>> /Users/markadams/Codes/petsc/src/dm/impls/swarm/swarm.c:45 >>>> [0]PETSC ERROR: #3 VecView_Swarm() at >>>> /Users/markadams/Codes/petsc/src/dm/impls/swarm/swarm.c:86 >>>> [0]PETSC ERROR: #4 VecView() at >>>> /Users/markadams/Codes/petsc/src/vec/vec/interface/vector.c:806 >>>> [0]PETSC ERROR: #5 PetscObjectView() at >>>> /Users/markadams/Codes/petsc/src/sys/objects/destroy.c:76 >>>> [0]PETSC ERROR: #6 PetscObjectViewFromOptions() at >>>> /Users/markadams/Codes/petsc/src/sys/objects/destroy.c:128 >>>> [0]PETSC ERROR: #7 VecViewFromOptions() at >>>> /Users/markadams/Codes/petsc/src/vec/vec/interface/vector.c:691 >>>> >>> >>> >>> -- >>> What most experimenters take for granted before they begin their >>> experiments is infinitely more interesting than any results to which their >>> experiments lead. >>> -- Norbert Wiener >>> >>> https://urldefense.us/v3/__https://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!cD7sluQj9NiJty0xU3K76VpLTY-Rrg5Yt76rcjqqqRBJrORnOfs8HUpFGI3GWx5NmacCoQMG4Rzh9rwsjjsXQw0$ >>> >>> <https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!cD7sluQj9NiJty0xU3K76VpLTY-Rrg5Yt76rcjqqqRBJrORnOfs8HUpFGI3GWx5NmacCoQMG4Rzh9rws_GyIuzA$ >>> > >>> >> > > -- > What most experimenters take for granted before they begin their > experiments is infinitely more interesting than any results to which their > experiments lead. > -- Norbert Wiener > > https://urldefense.us/v3/__https://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!cD7sluQj9NiJty0xU3K76VpLTY-Rrg5Yt76rcjqqqRBJrORnOfs8HUpFGI3GWx5NmacCoQMG4Rzh9rwsjjsXQw0$ > > <https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!cD7sluQj9NiJty0xU3K76VpLTY-Rrg5Yt76rcjqqqRBJrORnOfs8HUpFGI3GWx5NmacCoQMG4Rzh9rws_GyIuzA$ > > >
