Barry,
The short output is "SNESSolve has not converged due to Nan or Inf norm", the
full one is attached.
Cheers,
Sophie
________________________________
From: Barry Smith <bsm...@petsc.dev>
Sent: Friday, December 13, 2024 14:56
To: Blondel, Sophie <sblon...@utk.edu>
Cc: Jed Brown <j...@jedbrown.org>; Zhang, Hong <hongzh...@anl.gov>; Emil
Constantinescu <emcon...@anl.gov>; petsc-users@mcs.anl.gov
<petsc-users@mcs.anl.gov>; xolotl-psi-developm...@lists.sourceforge.net
<xolotl-psi-developm...@lists.sourceforge.net>
Subject: Re: [petsc-users] "-ts_exact_final_time matchstep" leads to
DIVERGED_STEP_REJECTED
There is a bit of complicated logic to determine the "adjusted" timestep in
TSAdaptChoose() when if (*accept && ts->exact_final_time ==
TS_EXACTFINALTIME_MATCHSTEP) {
Is it possible that hmax = tmax - t; is exactly zero, and the logic below
does not correctly handle that case?
0 TS dt 0. time 0.
0 TS dt 0. time 0.
0 TS dt 0. time 0.
0 TS dt 0. time 0.
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
TSAdapt basic step 0 stage rejected (SNES reason DIVERGED_FNORM_NAN)
t=0 + 0.000e+00 retrying with dt=0.000e+00
Sophie,
Any idea why SNES reason DIVERGED_FNORM_NAN? Could you run with
-snes_error_if_not_converged?
On Dec 13, 2024, at 2:34 PM, Blondel, Sophie <sblon...@utk.edu> wrote:
Hi everyone,
The first max time it is trying to reach is 1.0e-12 s, and the initial dt is
set to 1.0e-12 s from the commandline options. I believe it's not a formatting
issue and that the dt is actually set somewhere to 0 s because that's why the
step is rejected.
Best,
Sophie
________________________________
From: Barry Smith <bsm...@petsc.dev<mailto:bsm...@petsc.dev>>
Sent: Friday, December 13, 2024 14:21
To: Blondel, Sophie <sblon...@utk.edu<mailto:sblon...@utk.edu>>; Jed Brown
<j...@jedbrown.org<mailto:j...@jedbrown.org>>; Zhang, Hong
<hongzh...@anl.gov<mailto:hongzh...@anl.gov>>; Emil Constantinescu
<emcon...@anl.gov<mailto:emcon...@anl.gov>>
Cc: petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>
<petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>;
xolotl-psi-developm...@lists.sourceforge.net<mailto:xolotl-psi-developm...@lists.sourceforge.net>
<xolotl-psi-developm...@lists.sourceforge.net<mailto:xolotl-psi-developm...@lists.sourceforge.net>>
Subject: Re: [petsc-users] "-ts_exact_final_time matchstep" leads to
DIVERGED_STEP_REJECTED
Hm, what is the final time you are stepping towards in this run?
There is something wrong with the adapt code since it seems to start with a
dt of 0 but then tries "adapting" several times, but it could be the
monitor function does not correctly format numbers smaller than 1.e-12 and it
is just using truly small dt.
Jed, Hong, Emil?
Barry
On Dec 10, 2024, at 11:08 AM, Blondel, Sophie
<sblon...@utk.edu<mailto:sblon...@utk.edu>> wrote:
Good morning Barry,
Attached are the updated files, there is more useful information in them.
Cheers,
Sophie
________________________________
From: Blondel, Sophie via Xolotl-psi-development
<xolotl-psi-developm...@lists.sourceforge.net<mailto:xolotl-psi-developm...@lists.sourceforge.net>>
Sent: Monday, December 9, 2024 17:29
To: Barry Smith <bsm...@petsc.dev<mailto:bsm...@petsc.dev>>
Cc: petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>
<petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>;
xolotl-psi-developm...@lists.sourceforge.net<mailto:xolotl-psi-developm...@lists.sourceforge.net>
<xolotl-psi-developm...@lists.sourceforge.net<mailto:xolotl-psi-developm...@lists.sourceforge.net>>
Subject: Re: [Xolotl-psi-development] [petsc-users] "-ts_exact_final_time
matchstep" leads to DIVERGED_STEP_REJECTED
Hi Barry,
I hope you are doing well.
Attached are the output. To give a little more context, this is a "new" way of
running the code where multiple instances are created and communicate together
every few time steps (like coupling the code with itself in memory). Here there
are 3 instances that each have a separate TS object, plus one "main" instance
that doesn't solve anything but compute rates to exchange between the other
instances.
Cheers,
Sophie
________________________________
From: Barry Smith <bsm...@petsc.dev<mailto:bsm...@petsc.dev>>
Sent: Monday, December 9, 2024 15:12
To: Blondel, Sophie <sblon...@utk.edu<mailto:sblon...@utk.edu>>
Cc: petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>
<petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>;
xolotl-psi-developm...@lists.sourceforge.net<mailto:xolotl-psi-developm...@lists.sourceforge.net>
<xolotl-psi-developm...@lists.sourceforge.net<mailto:xolotl-psi-developm...@lists.sourceforge.net>>
Subject: Re: [petsc-users] "-ts_exact_final_time matchstep" leads to
DIVERGED_STEP_REJECTED
On Dec 9, 2024, at 2:56 PM, Blondel, Sophie via petsc-users
<petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>> wrote:
Hi,
I am trying to understand a strange behavior I'm encountering: when running my
application with "-ts_exact_final_time stepover" everything goes well, but when
I switch to "matchstep" I get DIVERGED_STEP_REJECTED before the first time step
is finished.
This is in the very first time-step in TSSolve?
Please run with -ts_monitor and send all the output (best for a short time
interval and do it twice once with -ts_exact_final_time stepover and once with
exact.
Barry
I tried increasing the maximum number of rejections and it just takes longer to
diverge, and if I set the value to "unlimited" it is basically an infinite loop.
Is there a way to check why is the step rejected? Could the "matchstep" option
change tolerances somewhere that would cause that behavior?
Let me know if I should provide more information.
Best,
Sophie Blondel
[sophie-Precision-3580:41950] shmem: mmap: an error occurred while determining
whether or not
/tmp/ompi.sophie-Precision-3580.1000/jf.0/2161508352/shared_mem_cuda_pool.sophie-Precision-3580
could be created.
[sophie-Precision-3580:41950] create_and_attach: unable to create shared memory
BTL coordinating structure :: size 134217728
Starting Xolotl (3.0.1-39-fdde1002)
Fri Dec 13 16:31:37 2024
NetworkHandler: Loaded network of 2066 DOF with: Vacancy Basal Interstitial
MaterialHandler: The selected material is: AlphaZr with the following
processes: noSolve reaction sink
TemperatureHandler: Using the time profile defined in: temp.txt
Starting Xolotl (3.0.1-39-fdde1002)
Fri Dec 13 16:31:38 2024
NetworkHandler: Loaded network of 660 DOF with: Vacancy Basal Interstitial
MaterialHandler: The selected material is: AlphaZr with the following
processes: constant reaction sink
TemperatureHandler: Using the time profile defined in: temp.txt
Starting Xolotl (3.0.1-39-fdde1002)
Fri Dec 13 16:31:38 2024
NetworkHandler: Loaded network of 668 DOF with: Vacancy Basal Interstitial
MaterialHandler: The selected material is: AlphaZr with the following
processes: constant reaction sink
TemperatureHandler: Using the time profile defined in: temp.txt
Starting Xolotl (3.0.1-39-fdde1002)
Fri Dec 13 16:31:38 2024
NetworkHandler: Loaded network of 738 DOF with: Vacancy Basal Interstitial
MaterialHandler: The selected material is: AlphaZr with the following
processes: constant reaction sink
TemperatureHandler: Using the time profile defined in: temp.txt
MultiXolotl: Restart file written to: xolotlRestart.txt
SolverHandler: 0D simulation
SolverHandler: 0D simulation
SolverHandler: 0D simulation
0 TS dt 0. time 0.
0 TS dt 0. time 0.
0 TS dt 0. time 0.
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
0 TS dt 0. time 0.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: SNESSolve has not converged due to Nan or Inf norm
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 SNESSolve_NEWTONLS() at
/home/sophie/Code/petsc/src/snes/impls/ls/ls.c:174
[0]PETSC ERROR: #2 SNESSolve() at
/home/sophie/Code/petsc/src/snes/interface/snes.c:4855
[0]PETSC ERROR: #3 TSStep_ARKIMEX() at
/home/sophie/Code/petsc/src/ts/impls/arkimex/arkimex.c:1510
[0]PETSC ERROR: #4 TSStep() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:3403
[0]PETSC ERROR: #5 TSSolve() at
/home/sophie/Code/petsc/src/ts/interface/ts.c:4049
[0]PETSC ERROR: #6 solve() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:380
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: Invalid argument
[0]PETSC ERROR: You are destroying an option that has been used with
PetscOptionsPush() but does not have a corresponding PetscOptionsPop()
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 PetscOptionsDestroy() at
/home/sophie/Code/petsc/src/sys/objects/options.c:178
[0]PETSC ERROR: #2 finalize() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:484
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: Invalid argument
[0]PETSC ERROR: You are destroying an option that has been used with
PetscOptionsPush() but does not have a corresponding PetscOptionsPop()
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 PetscOptionsDestroy() at
/home/sophie/Code/petsc/src/sys/objects/options.c:178
[0]PETSC ERROR: #2 finalize() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:484
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: It appears a new error in the code was triggered after a
previous error, possibly because:
[0]PETSC ERROR: - The first error was not properly handled via (for example)
the use of
[0]PETSC ERROR: PetscCall(TheFunctionThatErrors()); or
[0]PETSC ERROR: - The second error was triggered while handling the first
error.
[0]PETSC ERROR: Above is the traceback for the previous unhandled error,
below the traceback for the next error
[0]PETSC ERROR: ALL ERRORS in the PETSc libraries are fatal, you should add
the appropriate error checking to the code
[0]PETSC ERROR: Invalid argument
[0]PETSC ERROR: You are destroying an option that has been used with
PetscOptionsPush() but does not have a corresponding PetscOptionsPop()
[0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program
crashed before usage or a spelling mistake, etc!
[0]PETSC ERROR: Option left: name:-fieldsplit_0_pc_type value: sor source:
code
[0]PETSC ERROR: Option left: name:-fieldsplit_1_pc_type value: redundant
source: code
[0]PETSC ERROR: Option left: name:-pc_fieldsplit_detect_coupling (no value)
source: code
[0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.21.4-378-g9ca9edede9e GIT
Date: 2024-08-01 13:52:28 +0000
[0]PETSC ERROR: Unknown Name with 1 MPI process(es) and PETSC_ARCH on
sophie-Precision-3580 by sophie Fri Dec 13 16:31:37 2024
[0]PETSC ERROR: Configure options: PETSC_DIR=/home/sophie/Code/petsc
--prefix=/home/sophie/Code/petsc-install --with-cc=mpicc --with-cxx=mpicxx
--with-fc=0 --with-cuda=0 --with-openmp=0 --with-debugging=0
--with-shared-libraries --with-64-bit-indices --download-kokkos
--download-kokkos-kernels --download-boost --download-hdf5 --COPTFLAGS=-O3
--CXXOPTFLAGS=-O3
[0]PETSC ERROR: #1 PetscOptionsDestroy() at
/home/sophie/Code/petsc/src/sys/objects/options.c:178
[0]PETSC ERROR: #2 finalize() at
/home/sophie/Workspace/xolotl-alphaZr-source/xolotl/solver/src/PetscSolver.cpp:484
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
There are 3 unused database options. They are:
Option left: name:-fieldsplit_0_pc_type value: sor source: code
Option left: name:-fieldsplit_1_pc_type value: redundant source: code
Option left: name:-pc_fieldsplit_detect_coupling (no value) source: code
