Toby (Cc'ed) might know it. Or could you provide an example? --Junchao Zhang
On Fri, Apr 25, 2025 at 3:31 AM Klaij, Christiaan via petsc-users < petsc-users@mcs.anl.gov> wrote: > We recently upgraded from 3.19.4 to 3.22.4 but face the problem below with > the nested logging. Any ideas? > > Chris > > > [1]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > [1]PETSC ERROR: General MPI error > [1]PETSC ERROR: MPI error 1 MPI_ERR_BUFFER: invalid buffer pointer > [1]PETSC ERROR: See > https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!f64jR8FwcQdcTxYskijm4-CJ5UqGKAC-HRru1lRJXB558lncnm34NquLCRjFYnofEAp_ylqjbPxnKjJxuRyJXJ0UQMzn$ > > <https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGM3UaqHzc$> > for trouble shooting. > [1]PETSC ERROR: Petsc Release Version 3.22.4, Mar 01, 2025 > [1]PETSC ERROR: refresco with 2 MPI process(es) and PETSC_ARCH on > marclus3login2 by jwindt Fri Apr 25 08:52:30 2025 > [1]PETSC ERROR: Configure options: > --prefix=/home/jwindt/cmake_builds/refresco/install-libs-gnu > --with-mpi-dir=/cm/shared/apps/openmpi/gcc/4.0.2 --with-x=0 --with-mpe=0 > --with-debugging=0 --download-superlu_dist= > https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/superlu_dist-8.1.2.tar.gz__;!!G_uCfscf7eWS!f64jR8FwcQdcTxYskijm4-CJ5UqGKAC-HRru1lRJXB558lncnm34NquLCRjFYnofEAp_ylqjbPxnKjJxuRyJXBC6iON-$ > > <https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/superlu_dist-8.1.2.tar.gz__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGM21-2D-o$> > --with-blaslapack-dir=/cm/shared/apps/intel/oneapi/mkl/2021.4.0 > --download-parmetis= > https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/parmetis-4.0.3-p9.tar.gz__;!!G_uCfscf7eWS!f64jR8FwcQdcTxYskijm4-CJ5UqGKAC-HRru1lRJXB558lncnm34NquLCRjFYnofEAp_ylqjbPxnKjJxuRyJXNfbyQij$ > > <https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/parmetis-4.0.3-p9.tar.gz__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMW0lYHko$> > --download-metis= > https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/metis-5.1.0-p11.tar.gz__;!!G_uCfscf7eWS!f64jR8FwcQdcTxYskijm4-CJ5UqGKAC-HRru1lRJXB558lncnm34NquLCRjFYnofEAp_ylqjbPxnKjJxuRyJXAjPuW1M$ > > <https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/metis-5.1.0-p11.tar.gz__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMbSrIiUg$> > --with-packages-build-dir=/home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild > --with-ssl=0 --with-shared-libraries=1 CFLAGS="-std=gnu11 -Wall > -funroll-all-loops -O3 -DNDEBUG" CXXFLAGS="-std=gnu++14 -Wall > -funroll-all-loops -O3 -DNDEBUG " COPTFLAGS="-std=gnu11 -Wall > -funroll-all-loops -O3 -DNDEBUG" CXXOPTFLAGS="-std=gnu++14 -Wall > -funroll-all-loops -O3 -DNDEBUG " FCFLAGS="-Wall -funroll-all-loops > -ffree-line-length-0 -Wno-maybe-uninitialized -Wno-target-lifetime > -Wno-unused-function -O3 -DNDEBUG" F90FLAGS="-Wall -funroll-all-loops > -ffree-line-length-0 -Wno-maybe-uninitialized -Wno-target-lifetime > -Wno-unused-function -O3 -DNDEBUG" FOPTFLAGS="-Wall -funroll-all-loops > -ffree-line-length-0 -Wno-maybe-uninitialized -Wno-target-lifetime > -Wno-unused-function -O3 -DNDEBUG" > [1]PETSC ERROR: #1 PetscLogNestedTreePrint() at > /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:330 > [1]PETSC ERROR: #2 PetscLogNestedTreePrint() at > /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:384 > [1]PETSC ERROR: #3 PetscLogNestedTreePrint() at > /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:384 > [1]PETSC ERROR: #4 PetscLogNestedTreePrintTop() at > /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:420 > [1]PETSC ERROR: #5 PetscLogHandlerView_Nested_XML() at > /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:443 > [1]PETSC ERROR: #6 PetscLogHandlerView_Nested() at > /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/lognested.c:405 > [1]PETSC ERROR: #7 PetscLogHandlerView() at > /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/interface/loghandler.c:342 > [1]PETSC ERROR: #8 PetscLogView() at > /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/plog.c:2040 > -------------------------------------------------------------------------- > MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD > with errorcode 98. > > NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > You may or may not see output from other processes, depending on > exactly when Open MPI kills them. > -------------------------------------------------------------------------- > dr. ir. Christiaan Klaij > | senior researcher | Research & Development | CFD Development > T +31 317 49 33 44 <+31%20317%2049%2033%2044> | c.kl...@marin.nl | > https://urldefense.us/v3/__http://www.marin.nl__;!!G_uCfscf7eWS!f64jR8FwcQdcTxYskijm4-CJ5UqGKAC-HRru1lRJXB558lncnm34NquLCRjFYnofEAp_ylqjbPxnKjJxuRyJXPv1evZa$ > > <https://urldefense.us/v3/__https://www.marin.nl/__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGM8tSNH1g$> > [image: Facebook] > <https://urldefense.us/v3/__https://www.facebook.com/marin.wageningen__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMcVCZ9hk$> > [image: LinkedIn] > <https://urldefense.us/v3/__https://www.linkedin.com/company/marin__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMIDBZW7k$> > [image: YouTube] > <https://urldefense.us/v3/__https://www.youtube.com/marinmultimedia__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMVKWos24$> >
