I've tried with -log_sync, no complaints whatsoever, but the error is still there...
Chris ________________________________________ From: Stefano Zampini <stefano.zamp...@gmail.com> Sent: Tuesday, April 29, 2025 6:12 PM To: Randall Mackie Cc: Klaij, Christiaan; PETSc users list; Isaac, Toby Subject: Re: [petsc-users] problem with nested logging Can you try using -log_sync ? This should check every entry/exit points of logged Events and complain if something is not collectively called Stefano On Tue, Apr 29, 2025, 18:21 Randall Mackie <rlmackie...@gmail.com<mailto:rlmackie...@gmail.com>> wrote: ah okay, I missed that this was found using openmpi. then it’s probably not the same issue we had. I can’t remember in which version it was fixed (I’m away from my work computer)….I do know in our case openmpi and the latest Intel One API work fine. Randy On Apr 29, 2025, at 8:58 AM, Klaij, Christiaan <c.kl...@marin.nl<mailto:c.kl...@marin.nl>> wrote: Well, the error below only shows-up thanks to openmpi and gnu compilers. With the intel mpi and compilers it just hangs (tried oneapi 2023.1.0). In which version was that bug fixed? Chris ________________________________________ <image374583.png> dr. ir. Christiaan Klaij | senior researcher | Research & Development | CFD Development T +31 317 49 33 44<tel:+31%20317%2049%2033%2044> | c.kl...@marin.nl<mailto:c.kl...@marin.nl> | https://urldefense.us/v3/__http://www.marin.nl__;!!G_uCfscf7eWS!fVNaIuVq_b7_kmwTp2MK-UctVcpzKCe3sUT5S8oF98RkuoRFKUHXO7Zcxu1Q4rLN1PIEEhj8J6SJgQqcn7vmsWw$ <https://urldefense.us/v3/__https://www.marin.nl/__;!!G_uCfscf7eWS!bW2X4VgowGOLrAASgbFOR_Mh6HW4HtWqrdtpsvpnpiFrIwki34JOGyih-h-1bvgb-Bh4EdWRUoVqQW7s6Cx-ci9iNg$> <image322757.png><https://urldefense.us/v3/__https://www.facebook.com/marin.wageningen__;!!G_uCfscf7eWS!bW2X4VgowGOLrAASgbFOR_Mh6HW4HtWqrdtpsvpnpiFrIwki34JOGyih-h-1bvgb-Bh4EdWRUoVqQW7s6Cxl-rBbfA$> <image512282.png><https://urldefense.us/v3/__https://www.linkedin.com/company/marin__;!!G_uCfscf7eWS!bW2X4VgowGOLrAASgbFOR_Mh6HW4HtWqrdtpsvpnpiFrIwki34JOGyih-h-1bvgb-Bh4EdWRUoVqQW7s6Cw7FNelIQ$> <image090879.png><https://urldefense.us/v3/__https://www.youtube.com/marinmultimedia__;!!G_uCfscf7eWS!bW2X4VgowGOLrAASgbFOR_Mh6HW4HtWqrdtpsvpnpiFrIwki34JOGyih-h-1bvgb-Bh4EdWRUoVqQW7s6CwmfHQRog$> From: Randall Mackie <rlmackie...@gmail.com<mailto:rlmackie...@gmail.com>> Sent: Tuesday, April 29, 2025 3:33 PM To: Klaij, Christiaan Cc: Matthew Knepley; petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>; Isaac, Toby Subject: Re: [petsc-users] problem with nested logging You don't often get email from rlmackie...@gmail.com<mailto:rlmackie...@gmail.com>. Learn why this is important<https://urldefense.us/v3/__https://aka.ms/LearnAboutSenderIdentification__;!!G_uCfscf7eWS!fVNaIuVq_b7_kmwTp2MK-UctVcpzKCe3sUT5S8oF98RkuoRFKUHXO7Zcxu1Q4rLN1PIEEhj8J6SJgQqcJMthwFU$ <https://urldefense.us/v3/__https://aka.ms/LearnAboutSenderIdentification__;!!G_uCfscf7eWS!bW2X4VgowGOLrAASgbFOR_Mh6HW4HtWqrdtpsvpnpiFrIwki34JOGyih-h-1bvgb-Bh4EdWRUoVqQW7s6CwgJDUS5w$>> We had a similar issue last year that we eventually tracked down to a bug in Intel MPI AllReduce, which was around the same version you are using. Can you try a different MPI or the latest Intel One API and see if your error clears? Randy On Tue, Apr 29, 2025 at 8:17 AM Klaij, Christiaan via petsc-users <petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>> wrote: I don't think so, we have tracing in place to detect mismatches. But as soon as I switch the tracing on, the error disappears... Same if I add a counter or print statements before and after EventBegin/End. Looks like a memory corruption problem, maybe nothing to do with petsc despite the error message. Chris ________________________________________ From: Matthew Knepley <knep...@gmail.com<mailto:knep...@gmail.com><mailto:knep...@gmail.com<mailto:knep...@gmail.com>>> Sent: Tuesday, April 29, 2025 1:50 PM To: Klaij, Christiaan Cc: Junchao Zhang; petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>; Isaac, Toby Subject: Re: [petsc-users] problem with nested logging On Tue, Apr 29, 2025 at 6:50 AM Klaij, Christiaan <c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>>>> wrote: Here's a slightly better error message, obtained --with-debugging=1 Is it possible that you have a mismatched EventBegin()/EventEnd() in your code? That could be why we cannot reproduce it here. Thanks, Matt [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Petsc has generated inconsistent data [0]PETSC ERROR: MPIU_Allreduce() called in different locations (code lines) on different processors [0]PETSC ERROR: See https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjggvQAzPU$ for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.22.4, Mar 01, 2025 [0]PETSC ERROR: ./refresco with 2 MPI process(es) and PETSC_ARCH on marclus3login2 by cklaij Tue Apr 29 12:43:54 2025 [0]PETSC ERROR: Configure options: --prefix=/home/cklaij/ReFRESCO/trunk/install/extLibs --with-mpi-dir=/cm/shared/apps/openmpi/gcc/4.0.2 --with-x=0 --with-mpe=0 --with-debugging=1 --download-superlu_dist=https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/superlu_dist-8.1.2.tar.gz__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgVgVAJPM$ --with-blaslapack-dir=/cm/shared/apps/intel/oneapi/mkl/2021.4.0 --download-parmetis=https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/parmetis-4.0.3-p9.tar.gz__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgo2JWTO4$ --download-metis=https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/metis-5.1.0-p11.tar.gz__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgX9ZMYJA$ --with-packages-build-dir=/home/cklaij/ReFRESCO/trunk/build-libs/superbuild --with-ssl=0 --with-shared-libraries=1 [0]PETSC ERROR: #1 PetscLogNestedTreePrintLine() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:289 [0]PETSC ERROR: #2 PetscLogNestedTreePrint() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:379 [0]PETSC ERROR: #3 PetscLogNestedTreePrint() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:384 [0]PETSC ERROR: #4 PetscLogNestedTreePrint() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:384 [0]PETSC ERROR: #5 PetscLogNestedTreePrintTop() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:420 [0]PETSC ERROR: #6 PetscLogHandlerView_Nested_XML() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:443 [0]PETSC ERROR: #7 PetscLogHandlerView_Nested() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/handler/impls/nested/lognested.c:405 [0]PETSC ERROR: #8 PetscLogHandlerView() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/handler/interface/loghandler.c:342 [0]PETSC ERROR: #9 PetscLogView() at /home/cklaij/ReFRESCO/trunk/build-libs/superbuild/petsc/src/src/sys/logging/plog.c:2040 [0]PETSC ERROR: #10 /home/cklaij/ReFRESCO/trunk/Code/src/petsc_include_impl.F90:130 ________________________________________ [cid:ii_19681617e7812ff9cfc1] dr. ir. Christiaan Klaij | senior researcher | Research & Development | CFD Development T +31 317 49 33 44<tel:+31%20317%2049%2033%2044> | c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>>> | https://urldefense.us/v3/__http://www.marin.nl__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgJooxJhg$ <https://urldefense.us/v3/__https://www.marin.nl/__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgpOXjQSM$ > [Facebook]<https://urldefense.us/v3/__https://www.facebook.com/marin.wageningen__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjg_3Zt0Pw$ > [LinkedIn]<https://urldefense.us/v3/__https://www.linkedin.com/company/marin__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgcpgQdSE$ > [YouTube]<https://urldefense.us/v3/__https://www.youtube.com/marinmultimedia__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgn8qP6_I$ > From: Klaij, Christiaan <c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>>>> Sent: Monday, April 28, 2025 3:53 PM To: Matthew Knepley Cc: Junchao Zhang; petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>>; Isaac, Toby Subject: Re: [petsc-users] problem with nested logging Bisecting would be quite hard, it's not just the petsc version that changed, also other libs, compilers, even os components. Chris ________________________________________ From: Matthew Knepley <knep...@gmail.com<mailto:knep...@gmail.com><mailto:knep...@gmail.com<mailto:knep...@gmail.com>><mailto:knep...@gmail.com<mailto:knep...@gmail.com><mailto:knep...@gmail.com<mailto:knep...@gmail.com>>>> Sent: Monday, April 28, 2025 3:06 PM To: Klaij, Christiaan Cc: Junchao Zhang; petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>>; Isaac, Toby Subject: Re: [petsc-users] problem with nested logging You don't often get email from knep...@gmail.com<mailto:knep...@gmail.com><mailto:knep...@gmail.com<mailto:knep...@gmail.com>><mailto:knep...@gmail.com<mailto:knep...@gmail.com><mailto:knep...@gmail.com<mailto:knep...@gmail.com>>>. Learn why this is important<https://urldefense.us/v3/__https://aka.ms/LearnAboutSenderIdentification__;!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgcKEJXRA$ > On Mon, Apr 28, 2025 at 8:45 AM Klaij, Christiaan via petsc-users <petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>>>> wrote: I've tried adding a nested log viewer to src/snes/tutorials/ex70.c, but it does not replicate the problem and works fine. Perhaps it is related to fortran, since the manualpage of PetscLogNestedBegin says "No fortran support" (why? we've been using it in fortran ever since). Therefore I've tried adding it to src/snes/ex5f90.F90 and that also works fine. It seems I cannot replicate the problem in a small example, unfortunately. We cannot replicate it here. Is there a chance you could bisect to see what change is responsible? Thanks, Matt Chris ________________________________________ From: Junchao Zhang <junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com>><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com>>><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com>><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com>>>>> Sent: Saturday, April 26, 2025 3:51 PM To: Klaij, Christiaan Cc: petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>>>; Isaac, Toby Subject: Re: [petsc-users] problem with nested logging You don't often get email from junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com>><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com>>><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com>><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com><mailto:junchao.zh...@gmail.com<mailto:junchao.zh...@gmail.com>>>>. Learn why this is important<https://urldefense.us/v3/__https://aka.ms/LearnAboutSenderIdentification__;!!G_uCfscf7eWS!cmLENZvO_Uydoa8ciUmsyX-F-QiJt9a2ZfQRUvQnRibGm7VE6PED7S_BDsUgjOzvPZIJyiIoJ8bLJk6gVgt1dmE$ > Toby (Cc'ed) might know it. Or could you provide an example? --Junchao Zhang On Fri, Apr 25, 2025 at 3:31 AM Klaij, Christiaan via petsc-users <petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov><mailto:petsc-users@mcs.anl.gov<mailto:petsc-users@mcs.anl.gov>>>>>> wrote: We recently upgraded from 3.19.4 to 3.22.4 but face the problem below with the nested logging. Any ideas? Chris [1]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: General MPI error [1]PETSC ERROR: MPI error 1 MPI_ERR_BUFFER: invalid buffer pointer [1]PETSC ERROR: See https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!cmLENZvO_Uydoa8ciUmsyX-F-QiJt9a2ZfQRUvQnRibGm7VE6PED7S_BDsUgjOzvPZIJyiIoJ8bLJk6gIT68pbk$ <https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGM3UaqHzc$> for trouble shooting. [1]PETSC ERROR: Petsc Release Version 3.22.4, Mar 01, 2025 [1]PETSC ERROR: refresco with 2 MPI process(es) and PETSC_ARCH on marclus3login2 by jwindt Fri Apr 25 08:52:30 2025 [1]PETSC ERROR: Configure options: --prefix=/home/jwindt/cmake_builds/refresco/install-libs-gnu --with-mpi-dir=/cm/shared/apps/openmpi/gcc/4.0.2 --with-x=0 --with-mpe=0 --with-debugging=0 --download-superlu_dist=https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/superlu_dist-8.1.2.tar.gz__;!!G_uCfscf7eWS!cmLENZvO_Uydoa8ciUmsyX-F-QiJt9a2ZfQRUvQnRibGm7VE6PED7S_BDsUgjOzvPZIJyiIoJ8bLJk6grH5BbeU$ <https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/superlu_dist-8.1.2.tar.gz__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGM21-2D-o$> --with-blaslapack-dir=/cm/shared/apps/intel/oneapi/mkl/2021.4.0 --download-parmetis=https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/parmetis-4.0.3-p9.tar.gz__;!!G_uCfscf7eWS!cmLENZvO_Uydoa8ciUmsyX-F-QiJt9a2ZfQRUvQnRibGm7VE6PED7S_BDsUgjOzvPZIJyiIoJ8bLJk6gw4-tEtY$ <https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/parmetis-4.0.3-p9.tar.gz__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMW0lYHko$> --download-metis=https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/metis-5.1.0-p11.tar.gz__;!!G_uCfscf7eWS!cmLENZvO_Uydoa8ciUmsyX-F-QiJt9a2ZfQRUvQnRibGm7VE6PED7S_BDsUgjOzvPZIJyiIoJ8bLJk6gHq4uYiY$ <https://urldefense.us/v3/__https://updates.marin.nl/refresco/libs/metis-5.1.0-p11.tar.gz__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMbSrIiUg$> --with-packages-build-dir=/home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild --with-ssl=0 --with-shared-libraries=1 CFLAGS="-std=gnu11 -Wall -funroll-all-loops -O3 -DNDEBUG" CXXFLAGS="-std=gnu++14 -Wall -funroll-all-loops -O3 -DNDEBUG " COPTFLAGS="-std=gnu11 -Wall -funroll-all-loops -O3 -DNDEBUG" CXXOPTFLAGS="-std=gnu++14 -Wall -funroll-all-loops -O3 -DNDEBUG " FCFLAGS="-Wall -funroll-all-loops -ffree-line-length-0 -Wno-maybe-uninitialized -Wno-target-lifetime -Wno-unused-function -O3 -DNDEBUG" F90FLAGS="-Wall -funroll-all-loops -ffree-line-length-0 -Wno-maybe-uninitialized -Wno-target-lifetime -Wno-unused-function -O3 -DNDEBUG" FOPTFLAGS="-Wall -funroll-all-loops -ffree-line-length-0 -Wno-maybe-uninitialized -Wno-target-lifetime -Wno-unused-function -O3 -DNDEBUG" [1]PETSC ERROR: #1 PetscLogNestedTreePrint() at /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:330 [1]PETSC ERROR: #2 PetscLogNestedTreePrint() at /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:384 [1]PETSC ERROR: #3 PetscLogNestedTreePrint() at /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:384 [1]PETSC ERROR: #4 PetscLogNestedTreePrintTop() at /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:420 [1]PETSC ERROR: #5 PetscLogHandlerView_Nested_XML() at /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/xmlviewer.c:443 [1]PETSC ERROR: #6 PetscLogHandlerView_Nested() at /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/impls/nested/lognested.c:405 [1]PETSC ERROR: #7 PetscLogHandlerView() at /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/handler/interface/loghandler.c:342 [1]PETSC ERROR: #8 PetscLogView() at /home/jwindt/cmake_builds/refresco/build-libs-gnu/superbuild/petsc/src/src/sys/logging/plog.c:2040 -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 98. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [cid:ii_196725d1e2a809852191] dr. ir. Christiaan Klaij | senior researcher | Research & Development | CFD Development T +31 317 49 33 44<tel:+31%20317%2049%2033%2044> | c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>>>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl><mailto:c.kl...@marin.nl<mailto:c.kl...@marin.nl>>>>> | https://urldefense.us/v3/__http://www.marin.nl__;!!G_uCfscf7eWS!cmLENZvO_Uydoa8ciUmsyX-F-QiJt9a2ZfQRUvQnRibGm7VE6PED7S_BDsUgjOzvPZIJyiIoJ8bLJk6g8TwMMcw$ <https://urldefense.us/v3/__https://www.marin.nl/__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGM8tSNH1g$> [Facebook]<https://urldefense.us/v3/__https://www.facebook.com/marin.wageningen__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMcVCZ9hk$> [LinkedIn]<https://urldefense.us/v3/__https://www.linkedin.com/company/marin__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMIDBZW7k$> [YouTube]<https://urldefense.us/v3/__https://www.youtube.com/marinmultimedia__;!!G_uCfscf7eWS!biVlk6PKXoJvq5oVlmWdVJfW9tXv-JlwuWr3zg3jI5u1_jo8rvtZpEYnHO5RjdBqQEoqpqlJ3nusrFGMVKWos24$> -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://urldefense.us/v3/__https://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjg539kFLg$ <https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgMsu6hhA$ > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://urldefense.us/v3/__https://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjg539kFLg$ <https://urldefense.us/v3/__http://www.cse.buffalo.edu/*knepley/__;fg!!G_uCfscf7eWS!fFq1daAFFpKhBA_NWU3sd2QJe_S44rklqeRi0TB57XI0nQsh9jgy8iw3JNGpBbd21zqvO3QlGTLa7kjgMsu6hhA$ >
