Hi,
I have a query hitting a table of 25 million rows. The table has a text field
('identifier') which i need to query for matching rows. The question is if i
have multiple strings to match against this field I can use multiple OR
sub-statements or multiple statements in a UNION. The UNION seems to run
quicker.... is this to be expected? or is there anything else I can do improve
the speed of this query? Some query details:
table "dba_data_base", index:
"in_dba_data_base_identifier" btree (lower(identifier) varchar_pattern_ops)
Query 1
-------
datadb=#explain analyse SELECT a.bioassay_id, a.identifier, ratio, log_ratio,
p_value
FROM
dba_data_base a
WHERE
( lower(identifier) LIKE lower('BUGS0000001884677') OR
lower(identifier) LIKE lower('BUGS0000001884678') OR
lower(identifier) LIKE lower('BUGS0000001884679') OR
lower(identifier) LIKE lower('SpTIGR4-2210 (6F24)') )
ORDER BY a.identifier;
QUERY PLAN
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
--------------------------------
Sort (cost=14930.13..14939.77 rows=3857 width=62) (actual
time=3208.466..3208.652 rows=318 loops=1)
Sort Key: identifier
-> Bitmap Heap Scan on dba_data_base a (cost=134.43..14700.38 rows=3857
width=62) (actual time=81.106..3207.721 rows=318 loops=1)
Recheck Cond: ((lower(identifier) ~~ 'bugs0000001884677'::text) OR
(lower(identifier) ~~ 'bugs0000001884678'::text) OR (lower(identifier) ~~
'bugs0000001884679'::text) OR (lower(identifier) ~
~ 'sptigr4-2210 (6f24)'::text))
Filter: ((lower(identifier) ~~ 'bugs0000001884677'::text) OR
(lower(identifier) ~~ 'bugs0000001884678'::text) OR (lower(identifier) ~~
'bugs0000001884679'::text) OR (lower(identifier) ~~ 'spt
igr4-2210 (6f24)'::text))
-> BitmapOr (cost=134.43..134.43 rows=3857 width=0) (actual
time=71.397..71.397 rows=0 loops=1)
-> Bitmap Index Scan on in_dba_data_base_identifier
(cost=0.00..32.64 rows=964 width=0) (actual time=0.029..0.029 rows=0 loops=1)
Index Cond: (lower(identifier) ~=~
'bugs0000001884677'::character varying)
-> Bitmap Index Scan on in_dba_data_base_identifier
(cost=0.00..32.64 rows=964 width=0) (actual time=0.008..0.008 rows=0 loops=1)
Index Cond: (lower(identifier) ~=~
'bugs0000001884678'::character varying)
-> Bitmap Index Scan on in_dba_data_base_identifier
(cost=0.00..32.64 rows=964 width=0) (actual time=0.008..0.008 rows=0 loops=1)
Index Cond: (lower(identifier) ~=~
'bugs0000001884679'::character varying)
-> Bitmap Index Scan on in_dba_data_base_identifier
(cost=0.00..32.64 rows=964 width=0) (actual time=71.347..71.347 rows=318
loops=1)
Index Cond: (lower(identifier) ~=~ 'sptigr4-2210
(6f24)'::character varying)
Total runtime: 3208.904 ms
Query 2
-------
datadb=#explain analyse SELECT a.bioassay_id, a.identifier, ratio, log_ratio,
p_value
FROM
dba_data_base a
WHERE
lower(identifier) LIKE lower('BUGS0000001884677')
UNION
SELECT a.bioassay_id, a.identifier, ratio, log_ratio, p_value
FROM
dba_data_base a
WHERE
lower(identifier) LIKE lower('BUGS0000001884678')
UNION
SELECT a.bioassay_id, a.identifier, ratio, log_ratio, p_value
FROM
dba_data_base a
WHERE
lower(identifier) LIKE lower('BUGS0000001884679')
UNION
SELECT a.bioassay_id, a.identifier, ratio, log_ratio, p_value
FROM
dba_data_base a
WHERE
lower(identifier) LIKE lower('SpTIGR4-2210 (6F24)')
ORDER BY identifier;
Sort (cost=15702.26..15711.90 rows=3856 width=62) (actual time=3.688..3.886
rows=317 loops=1)
Sort Key: identifier
-> Unique (cost=15414.74..15472.58 rows=3856 width=62) (actual
time=2.663..3.387 rows=317 loops=1)
-> Sort (cost=15414.74..15424.38 rows=3856 width=62) (actual
time=2.660..2.834 rows=318 loops=1)
Sort Key: bioassay_id, identifier, ratio, log_ratio, p_value
-> Append (cost=32.88..15185.06 rows=3856 width=62) (actual
time=0.320..2.131 rows=318 loops=1)
-> Bitmap Heap Scan on dba_data_base a
(cost=32.88..3786.62 rows=964 width=62) (actual time=0.041..0.041 rows=0
loops=1)
Filter: (lower(identifier) ~~
'bugs0000001884677'::text)
-> Bitmap Index Scan on in_dba_data_base_identifier
(cost=0.00..32.64 rows=964 width=0) (actual time=0.036..0.036 rows=0 loops=1)
Index Cond: (lower(identifier) ~=~
'bugs0000001884677'::character varying)
-> Bitmap Heap Scan on dba_data_base a
(cost=32.88..3786.62 rows=964 width=62) (actual time=0.010..0.010 rows=0
loops=1)
Filter: (lower(identifier) ~~
'bugs0000001884678'::text)
-> Bitmap Index Scan on in_dba_data_base_identifier
(cost=0.00..32.64 rows=964 width=0) (actual time=0.008..0.008 rows=0 loops=1)
Index Cond: (lower(identifier) ~=~
'bugs0000001884678'::character varying)
-> Bitmap Heap Scan on dba_data_base a
(cost=32.88..3786.62 rows=964 width=62) (actual time=0.010..0.010 rows=0
loops=1)
Filter: (lower(identifier) ~~
'bugs0000001884679'::text)
-> Bitmap Index Scan on in_dba_data_base_identifier
(cost=0.00..32.64 rows=964 width=0) (actual time=0.008..0.008 rows=0 loops=1)
Index Cond: (lower(identifier) ~=~
'bugs0000001884679'::character varying)
-> Bitmap Heap Scan on dba_data_base a
(cost=32.88..3786.62 rows=964 width=62) (actual time=0.255..1.676 rows=318
loops=1)
Filter: (lower(identifier) ~~ 'sptigr4-2210
(6f24)'::text)
-> Bitmap Index Scan on in_dba_data_base_identifier
(cost=0.00..32.64 rows=964 width=0) (actual time=0.178..0.178 rows=318 loops=1)
Index Cond: (lower(identifier) ~=~
'sptigr4-2210 (6f24)'::character varying)
Total runtime: 4.174 ms
Also which should scale better if I add more strings to match? would there be
any better design patterns for this problem?
Thanks for any help
Adam
select version();
version
----------------------------------------------------------------
PostgreSQL 8.2.12 on i686-pc-linux-gnu, compiled by GCC 2.95.4
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