To Thorsten and Michael thanks for reply but i thought i needed to manually install swig to help me install libsvm as the error still persists below when i do from mvpa.suite import*. I have installed latest version by using snapshot command when i run it everything is up to date it says, even though it still says pymvpa-0.6.0~rc1 from mvpa.wtf and i don't have libsvm built or installed which i need, so i tried to do it manually. I still have no success though.
Any help would be great. thanks Amit from mvpa.suite import * WARNING: Failed to load fast implementation of SMLR. May be you forgotten to build it. We will use much slower pure-Python version. Original exception was /home/amit/pymvpa-0.6.0~rc1/mvpa/clfs/libsmlrc/smlrc.pyd: cannot open shared object file: No such file or directory * Please note: warnings are printed only once, but underlying problem might occur many times * WARNING: SMLR: C implementation is not available. Using pure Python one /usr/lib/pymodules/python2.6/matplotlib/numerix/__init__.py:18: DeprecationWarning: ********************************************************** matplotlib.numerix and all its subpackages are deprecated. They will be removed soon. Please use numpy instead. ********************************************************** Current date: 2011-03-23 22:07 PyMVPA: Version: 0.6.0~rc1 Hash: feda3f526efd71a5ae34f0c1fd3d8f2334d5f412 Path: mvpa/__init__.py Version control (GIT): GIT information could not be obtained due "mvpa/.. is not under GIT" SYSTEM: OS: posix Linux 2.6.35-22-generic #35-Ubuntu SMP Sat Oct 16 20:45:36 UTC 2010 Distribution: Ubuntu/10.10/maverick EXTERNALS: Present: cPickle, ctypes, good scipy.stats.rdist, good scipy.stats.rv_discrete.ppf, griddata, gzip, h5py, matplotlib, mdp, mdp ge 2.4, nibabel, numpy, pylab, pylab plottable, pywt, pywt wp reconstruct, reportlab, scipy, sg ge 0.6.4, sg ge 0.6.5, sg_fixedcachesize, shogun, shogun.krr, shogun.mpd, shogun.svmocas Absent: atlas_fsl, atlas_pymvpa, elasticnet, glmnet, hcluster, lars, libsvm, libsvm verbosity control, lxml, mass, nipy, nose, openopt, pprocess, pywt wp reconstruct fixed, rpy2, running ipython env, shogun.lightsvm, shogun.svrlight, skl, weave Versions of critical externals: shogun:full : 0.9.3_r4889_2010-05-27_20:52_ shogun:rev : 4889 reportlab : 2.4 shogun : 0.9.3 matplotlib : 0.99.3 scipy : 0.7.2 mdp : 2.6 numpy : 1.3.0 ctypes : 1.1.0 matplotlib : 0.99.3 nifti : failed to query due to "nifti is not a known dependency key." numpy : 1.3.0 pywt : 0.2.0 shogun : v0.9.3_r4889_2010-05-27_20:52_ Matplotlib backend: TkAgg RUNTIME: PyMVPA Environment Variables: PyMVPA Runtime Configuration: [externals] have griddata = yes have pprocess = no have good scipy.stats.rdist = yes have pylab plottable = yes have pywt wp reconstruct = yes have ctypes = yes have lxml = no have running ipython env = no have nibabel = yes have sg_fixedcachesize = yes have elasticnet = no have shogun.mpd = yes have matplotlib = yes have pywt wp reconstruct fixed = no have scipy = yes have reportlab = yes have openopt = no have libsvm = no have nose = no have weave = no have atlas_fsl = no have h5py = yes have hcluster = no have sg ge 0.6.4 = yes have sg ge 0.6.5 = yes have good scipy.stats.rv_discrete.ppf = yes have skl = no have mdp ge 2.4 = yes have shogun.svrlight = no have lars = no have shogun.svmocas = yes have nipy = no have glmnet = no have mass = no have shogun = yes have libsvm verbosity control = no have atlas_pymvpa = no have shogun.krr = yes have cpickle = yes have mdp = yes have numpy = yes have pylab = yes have rpy2 = no have shogun.lightsvm = no have pywt = yes have gzip = yes > Date: Wed, 23 Mar 2011 15:24:53 +0100 > From: thorstenkr...@googlemail.com > To: pkg-exppsy-pymvpa@lists.alioth.debian.org > Subject: Re: [pymvpa] SMLR shared library not found > > I'm not sure why the installation from NeuroDebian doesn't work for > you, but maybe you have some old rests of previous installs on your > box. > > Why would you want to install swig manuall? Just do > > sudo apt-get install swig > > or similar in a terminal, this should get you swig. It must be > callable in a terminal in order to let the installation complete. > > Greetings, > Thorsten > > 2011/3/23 amit patel <damitami...@hotmail.co.uk>: > > Hello > > > > I have installed the new updates using apt-get install python-mvpa-snapshot > > from your > >> NeuroDebian repository but error still persists? > > > > so doing it manually(following instructions) i did this > > > > amit@amit-MS-7346:~/pymvpa-0.6.0~rc1$ python setup.py install --with-libsvm > > > > i get this error > > error: command 'swig' failed with exit status 1 > > So i presume i have to tell it where i downloaded swig? it is in > > /home/amit/swig-2.0.2 > > > > so do i do this python setup.py install --with-libsvm > > [-I/home/amit/swig-2.0.2], only this does not work. Also don't i have to > > tell it where libsvm-3.0 is as well? > > > > I am according to instructions have to do something like this > > > > python setup.py build_ext --with-libsvm \ > > [ -I<LIBSVM_INCLUDEDIR> -L<LIBSVM_LIBDIR> ] > > > > any help would be great......... thank you > > > > Amit > > > > > > > > > >> Date: Tue, 22 Mar 2011 15:59:50 -0400 > >> From: deb...@onerussian.com > >> To: pkg-exppsy-pymvpa@lists.alioth.debian.org > >> Subject: Re: [pymvpa] SMLR shared library not found > >> > >> on ubuntu -- just apt-get install python-mvpa-snapshot from our > >> NeuroDebian repository: > >> > >> http://neuro.debian.net > >> > >> otherwise follow > >> http://www.pymvpa.org/installation.html#alternative-build-procedure > >> > >> On Tue, 22 Mar 2011, amit patel wrote: > >> > No such file or directory > >> > * Please note: warnings are printed only once, but underlying problem > >> > might occur many times * > >> > WARNING: SMLR: C implementation is not available. Using pure Python one > >> -- > >> .-. > >> =------------------------------ /v\ ----------------------------= > >> Keep in touch // \\ (yoh@|www.)onerussian.com > >> Yaroslav Halchenko /( )\ ICQ#: 60653192 > >> Linux User ^^-^^ [175555] > >> > >> > >> > >> _______________________________________________ > >> Pkg-ExpPsy-PyMVPA mailing list > >> Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org > >> http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa > > > > _______________________________________________ > > Pkg-ExpPsy-PyMVPA mailing list > > Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org > > http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa > > > > > > _______________________________________________ > Pkg-ExpPsy-PyMVPA mailing list > Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org > http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
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