Wow, this is my version information.
Current date: 2011-07-26 10:30 PyMVPA: Version: 0.6.0~rc2 Hash: abd29b48d0d585cc8ba91d800a6e884d586c4027 Path: /usr/local/neurosoft/lib/python2.6/site-packages/mvpa/__init__.pyc Version control (GIT): GIT information could not be obtained due "/usr/local/neurosoft/lib/python2.6/site-packages/mvpa/.. is not under GIT" SYSTEM: OS: posix Linux 2.6.18-164.el5 #1 SMP Thu Sep 3 03:28:30 EDT 2009 Distribution: redhat/5.4/Final EXTERNALS: Present: cPickle, ctypes, good scipy.stats.rdist, good scipy.stats.rv_discrete.ppf, griddata, gzip, h5py, libsvm, libsvm verbosity control, matplotlib, nibabel, nose, numpy, pylab, pylab plottable, running ipython env, scipy, weave Absent: atlas_fsl, atlas_pymvpa, elasticnet, glmnet, hcluster, lars, lxml, mass, mdp, mdp ge 2.4, nipy, openopt, pprocess, pywt, pywt wp reconstruct, pywt wp reconstruct fixed, reportlab, rpy2, sg ge 0.6.4, sg ge 0.6.5, sg_fixedcachesize, shogun, shogun.krr, shogun.lightsvm, shogun.mpd, shogun.svmocas, shogun.svrlight, skl Versions of critical externals: ipython : 0.10.1 scipy : 0.8.0 numpy : 1.5.1 matplotlib : 1.0.1 ctypes : 1.1.0 matplotlib : 1.0.1 nifti : failed to query due to "nifti is not a known dependency key." numpy : 1.5.1 Matplotlib backend: TkAgg Zonglei Zhen On Tue, Jul 26, 2011 at 10:24 AM, Yaroslav Halchenko <[email protected]>wrote: > please share the output of mvpa.wtf() which would answer > "version" question > > because with rc4 (although seems to be reported as rc3 :-/ ) and current > master everything seems to be ok on my box: > > In [1]: from mvpa.suite import * > h5load/usr/lib/pymodules/python2.6/nose/plugins/manager.py:405: > UserWarning: Module paste was already imported from None, but > /usr/lib/python2.6/dist-packages is being added to sys.path > import pkg_resources > > In [2]: dataset = h5load('att.gzipped.hdf5') > > In [3]: print dataset.summary() > Dataset: 72x821@float32, <sa: chunks,targets,time_coords,time_indices>, > <fa: voxel_indices>, <a: imghdr,mapper,voxel_dim,voxel_eldim> > stats: mean=-5.2752e-08 std=0.999996 var=0.999993 min=-3.02555 > max=3.05246 > > Counts of targets in each chunk: > chunks\targets attf attm > --- --- > 0.0 6 6 > 1.0 6 6 > 2.0 6 6 > 3.0 6 6 > 4.0 6 6 > 5.0 6 6 > > Summary for targets across chunks > targets mean std min max #chunks > attf 6 0 6 6 6 > attm 6 0 6 6 6 > > Summary for chunks across targets > chunks mean std min max #targets > 0 6 0 6 6 2 > 1 6 0 6 6 2 > 2 6 0 6 6 2 > 3 6 0 6 6 2 > 4 6 0 6 6 2 > 5 6 0 6 6 2 > Sequence statistics for 72 entries from set ['attf', 'attm'] > Counter-balance table for orders up to 2: > Targets/Order O1 | O2 | > attf: 30 6 | 24 12 | > attm: 5 30 | 10 24 | > Correlations: min=-1 max=1 mean=-0.014 sum(abs)=35 > > In [4]: gnbsl = > sphere_gnbsearchlight(GNB(),NFoldPartitioner(),radius=3,postproc=mean_sample()) > > In [5]: slmap = gnbsl(dataset) > > In [6]: print slmap.summary() > Dataset: 1x821@float64, <a: mapper> stats: mean=0.473186 std=0.0686585 > var=0.00471399 min=0.319444 max=0.652778 > > > In [7]: print mvpa.__version__ > 0.6.0~rc3 > > In [8]: print mvpa.wtf() > Current date: 2011-07-25 22:19 > PyMVPA: > Version: 0.6.0~rc3 > Hash: fd0f2809300cc25e81ee21a3a876d00d524402c1 > Path: /usr/lib/pymodules/python2.6/mvpa/__init__.pyc > Version control (GIT): > GIT information could not be obtained due > "/usr/lib/pymodules/python2.6/mvpa/.. is not under GIT" > SYSTEM: > OS: posix Linux 2.6.38-2-amd64 #1 SMP Thu Apr 7 04:28:07 UTC > 2011 > Distribution: debian/wheezy/sid > EXTERNALS: > Present: atlas_fsl, atlas_pymvpa, cPickle > .... > > On Mon, 25 Jul 2011, Yaroslav Halchenko wrote: > > > ah -- that is why mailman refused first to post -- kind you shared the > > 1MB dataset with the list ;) ok -- will have a look > > > On Tue, 26 Jul 2011, Zhen Zonglei wrote: > > > > Thanks very much, Yarik. > > > > The fellowing the summary of dataset. For hdf5 file, please see > > > attachments. > -- > =------------------------------------------------------------------= > Keep in touch www.onerussian.com > Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic > > _______________________________________________ > Pkg-ExpPsy-PyMVPA mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa >
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