> On 23 Jul 2015, at 16:47, John Baublitz <jb...@bu.edu> wrote: > > Thank you for the quick response. I tried outputting a surface file file > before using both niml.write() and surf.write() as my lab would prefer to > visualize the results on the surface. I mentioned this in a previous email > and was told that I should be using niml.write() and visualize using SUMA. I > decided against this because not only would it fail to open with our version > of SUMA (I can include the error if that would be helpful)
Indeed, that would be helpful. > but I have found no evidence that .dset files are compatible with FreeSurfer. > My lab has a hard requirement that whatever we are outputting from the > analysis must be able to be visualized in FreeSurfer. Is there any way to > output a FreeSurfer-compatible surface file using PyMVPA? Not at the moment, but it would be nice to support GIFTI. Currently surface anatomy can be exported as GIFTI, but there is no support currently for functional files. I’ve added an issue [1], so it may be added in the future. > If not, is there a utility to convert from SUMA surface files to FreeSurfer > surface files included in PyMVPA? ConvertDset (included with AFNI) can convert between NIML and GIFTI, and mris_convert (included with Freesufer) can convert between GIFTI and a variety of other file formats used in FreeSurfer. [1] https://github.com/PyMVPA/PyMVPA/issues/347 _______________________________________________ Pkg-ExpPsy-PyMVPA mailing list Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
