Your message dated Wed, 26 Mar 2008 23:05:29 +0000 with message-id <[EMAIL PROTECTED]> and subject line Bug#456862: fixed in hdf5 1.6.6-1 has caused the Debian Bug report #456862, regarding hdf5: FTBFS: dpkg-shlibdeps: failure: couldn't find library libh5test-1.6.5.so.0 needed by debian/hdf5-tools/usr/bin/h5perf (its RPATH is ''). to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [EMAIL PROTECTED] immediately.) -- 456862: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=456862 Debian Bug Tracking System Contact [EMAIL PROTECTED] with problems
--- Begin Message ---Package: hdf5 version: 1.6.5-5 Severity: serious User: [EMAIL PROTECTED] Usertags: qa-ftbfs-20071217 qa-ftbfs Justification: FTBFS on i386 Hi, During a rebuild of all packages in sid, your package failed to build on i386. Relevant part: > make[3]: Entering directory > `/build/user/hdf5-1.6.5/debian/build-mpich/examples' > ../../../bin/mkdirs > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c > + /usr/bin/install -c -m 644 ../../../examples/h5_chunk_read.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_compound.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_extend_write.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_group.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_read.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_write.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_select.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_attribute.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_mount.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_reference.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/h5_drivers.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > + /usr/bin/install -c -m 644 ../../../examples/ph5example.c > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/doc/hdf5/examples/c/. > make[3]: Leaving directory > `/build/user/hdf5-1.6.5/debian/build-mpich/examples' > make[2]: Leaving directory `/build/user/hdf5-1.6.5/debian/build-mpich' > PATH="$PATH:/sbin" ldconfig -n > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/lib > ---------------------------------------------------------------------- > Libraries have been installed in: > /build/user/hdf5-1.6.5/debian/build-mpich/tmpinst/usr/lib > > If you ever happen to want to link against installed libraries > in a given directory, LIBDIR, you must either use libtool, and > specify the full pathname of the library, or use the `-LLIBDIR' > flag during linking and do at least one of the following: > - add LIBDIR to the `LD_LIBRARY_PATH' environment variable > during execution > - add LIBDIR to the `LD_RUN_PATH' environment variable > during linking > - use the `-Wl,--rpath -Wl,LIBDIR' linker flag > - have your system administrator add LIBDIR to `/etc/ld.so.conf' > > See any operating system documentation about shared libraries for > more information, such as the ld(1) and ld.so(8) manual pages. > ---------------------------------------------------------------------- > make[1]: Leaving directory `/build/user/hdf5-1.6.5/debian/build-mpich' > dh_install -plibhdf5-mpich-1.6.5-0 -plibhdf5-mpich-dev \ > --sourcedir=debian/build-mpich/tmpinst > dh_testdir > dh_testroot > dh_installdocs -a > dh_installman -a > dh_installchangelogs -a -k release_docs/RELEASE.txt > dh_link -a > dh_strip -a > dh_compress -a > dh_fixperms -a > dh_makeshlibs -plibhdf5-lam-1.6.5-0 -V libhdf5-lam-1.6.5-0 > dh_makeshlibs -plibhdf5-mpich-1.6.5-0 -V libhdf5-mpich-1.6.5-0 > dh_installdeb -a > dh_shlibdeps -phdf5-tools -Llibhdf5-serial-1.6.5-0 > -ldebian/libhdf5-serial-1.6.5-0/usr/lib > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/gif2h5 shouldn't be > linked with libpthread.so.0 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/gif2h5 shouldn't be > linked with libz.so.1 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/gif2h5 shouldn't be > linked with libm.so.6 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5dump shouldn't be > linked with libpthread.so.0 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5dump shouldn't be > linked with libz.so.1 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5dump shouldn't be > linked with libm.so.6 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h52gif shouldn't be > linked with libpthread.so.0 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h52gif shouldn't be > linked with libz.so.1 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h52gif shouldn't be > linked with libm.so.6 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5jam shouldn't be linked > with libz.so.1 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5jam shouldn't be linked > with libm.so.6 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5import shouldn't be > linked with libpthread.so.0 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5import shouldn't be > linked with libz.so.1 (it uses none of its symbols). > dpkg-shlibdeps: warning: debian/hdf5-tools/usr/bin/h5import shouldn't be > linked with libm.so.6 (it uses none of its symbols). > dpkg-shlibdeps: failure: couldn't find library libh5test-1.6.5.so.0 needed > by debian/hdf5-tools/usr/bin/h5perf (its RPATH is ''). > Note: libraries are not searched in other binary packages that do not have > any shlibs file. > To help dpkg-shlibdeps find private libraries, you might need to set > LD_LIBRARY_PATH. > dh_shlibdeps: command returned error code 512 > make: *** [binary-arch] Error 1 > dpkg-buildpackage: failure: /usr/bin/fakeroot debian/rules binary gave error > exit status 2 The full build log is available from: http://people.debian.org/~lucas/logs/2007/12/17 A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on about 50 AMD64 nodes of the Grid'5000 platform, using a clean chroot containing a sid i386 environment. Internet was not accessible from the build systems. -- | Lucas Nussbaum | [EMAIL PROTECTED] http://www.lucas-nussbaum.net/ | | jabber: [EMAIL PROTECTED] GPG: 1024D/023B3F4F |
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--- Begin Message ---Source: hdf5 Source-Version: 1.6.6-1 We believe that the bug you reported is fixed in the latest version of hdf5, which is due to be installed in the Debian FTP archive: hdf5-tools_1.6.6-1_i386.deb to pool/main/h/hdf5/hdf5-tools_1.6.6-1_i386.deb hdf5_1.6.6-1.diff.gz to pool/main/h/hdf5/hdf5_1.6.6-1.diff.gz hdf5_1.6.6-1.dsc to pool/main/h/hdf5/hdf5_1.6.6-1.dsc hdf5_1.6.6.orig.tar.gz to pool/main/h/hdf5/hdf5_1.6.6.orig.tar.gz libhdf5-doc_1.6.6-1_all.deb to pool/main/h/hdf5/libhdf5-doc_1.6.6-1_all.deb libhdf5-lam-1.6.6-0_1.6.6-1_i386.deb to pool/main/h/hdf5/libhdf5-lam-1.6.6-0_1.6.6-1_i386.deb libhdf5-lam-dev_1.6.6-1_i386.deb to pool/main/h/hdf5/libhdf5-lam-dev_1.6.6-1_i386.deb libhdf5-mpich-1.6.6-0_1.6.6-1_i386.deb to pool/main/h/hdf5/libhdf5-mpich-1.6.6-0_1.6.6-1_i386.deb libhdf5-mpich-dev_1.6.6-1_i386.deb to pool/main/h/hdf5/libhdf5-mpich-dev_1.6.6-1_i386.deb libhdf5-openmpi-1.6.6-0_1.6.6-1_i386.deb to pool/main/h/hdf5/libhdf5-openmpi-1.6.6-0_1.6.6-1_i386.deb libhdf5-openmpi-dev_1.6.6-1_i386.deb to pool/main/h/hdf5/libhdf5-openmpi-dev_1.6.6-1_i386.deb libhdf5-serial-1.6.6-0_1.6.6-1_i386.deb to pool/main/h/hdf5/libhdf5-serial-1.6.6-0_1.6.6-1_i386.deb libhdf5-serial-dev_1.6.6-1_i386.deb to pool/main/h/hdf5/libhdf5-serial-dev_1.6.6-1_i386.deb A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [EMAIL PROTECTED], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Francesco Paolo Lovergine <[EMAIL PROTECTED]> (supplier of updated hdf5 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [EMAIL PROTECTED]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.7 Date: Wed, 02 Jan 2008 16:38:38 +0100 Source: hdf5 Binary: libhdf5-serial-1.6.6-0 libhdf5-serial-dev libhdf5-lam-1.6.6-0 libhdf5-lam-dev libhdf5-openmpi-1.6.6-0 libhdf5-openmpi-dev libhdf5-mpich-1.6.6-0 libhdf5-mpich-dev libhdf5-doc hdf5-tools Architecture: source all i386 Version: 1.6.6-1 Distribution: unstable Urgency: low Maintainer: Francesco Paolo Lovergine <[EMAIL PROTECTED]> Changed-By: Francesco Paolo Lovergine <[EMAIL PROTECTED]> Description: hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-lam-1.6.6-0 - Hierarchical Data Format 5 (HDF5) - runtime files - LAM version libhdf5-lam-dev - Hierarchical Data Format 5 (HDF5) - development files - LAM versi libhdf5-mpich-1.6.6-0 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH version libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH ver libhdf5-openmpi-1.6.6-0 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI versi libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI v libhdf5-serial-1.6.6-0 - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve Closes: 449723 456862 457080 463393 466739 Changes: hdf5 (1.6.6-1) unstable; urgency=low . [ Francesco Paolo Lovergine ] * New upstream release. All Debian source changes already merged. * Manually run "autoupdate; libtoolize --force --copy; aclocal; autoheader; autoconf" in the base directory, and "autoupdate; libtoolize --force --copy; aclocal; autoconf" in the c++/ directory. * Added Homepage field in debian/control.in * Watch file updated. (closes: #449723) * Fixed rpath issue with dh_shlibdeps due to missing library path. Thanks both Adam C Powell IV and Riku Voipio for NMU. (closes: #463393,#456862,#466739) * [Lintian] Policy bumped to 3.7.3 * [Lintian] Now using ${binary:Version} in debian/control.in * Added Vcs-* fields to debian/control.in . [ Adam C Powell IV ] * Added OpenMPI version (closes: #457080) * Patch to H5public.h for OpenMPI is for C++ programs which include hdf5.h in an extern "C" block. Patch included for reference and installed on fly. Files: 64e4895eab3e120e9df3b025c935747d 1099 science optional hdf5_1.6.6-1.dsc 6c7fcc91f1579555d88bb10c6c9a33a9 5299558 science optional hdf5_1.6.6.orig.tar.gz c8bba0ff85e6b36cebb6367bc3c17288 519310 science optional hdf5_1.6.6-1.diff.gz e835adad80b83d6404ff6ad7f7837433 2021756 doc optional libhdf5-doc_1.6.6-1_all.deb 36c0def6446f70f865a843fc916c7b5b 629300 libs optional libhdf5-serial-1.6.6-0_1.6.6-1_i386.deb 3ae424fe76c9018bb156d9a208cb380d 749660 libdevel optional libhdf5-serial-dev_1.6.6-1_i386.deb ce9efaf7d23e2794b3731ef3ef1eb4cf 527800 libs extra libhdf5-lam-1.6.6-0_1.6.6-1_i386.deb ab848a34c830b0d5ed9e4f4eefef3112 620464 libdevel extra libhdf5-lam-dev_1.6.6-1_i386.deb 053030a4c84b2d2ec5b480e7cfe680f6 528032 libs extra libhdf5-openmpi-1.6.6-0_1.6.6-1_i386.deb 79d765a25f64964adc51e6f633c5b975 620750 libdevel extra libhdf5-openmpi-dev_1.6.6-1_i386.deb a20d0fed33fb5aebe5b085cc16874ae7 706630 libs extra libhdf5-mpich-1.6.6-0_1.6.6-1_i386.deb 17b77507fcafac88f2544e3637dd5175 620310 libdevel extra libhdf5-mpich-dev_1.6.6-1_i386.deb f55f9019de91214cbcd2b9ad354b6901 245098 science optional hdf5-tools_1.6.6-1_i386.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.6 (GNU/Linux) iD8DBQFH4NwHpFNRmenyx0cRAtOJAKDi8KMNEhd+Ak+gTjoXFNVVBA5IxgCfQ3yb BuWfreU8JvdlbE3TzuqkTdw= =kXc6 -----END PGP SIGNATURE-----
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