Your message dated Thu, 04 Aug 2011 21:02:34 +0000
with message-id <e1qp53q-0007dl...@franck.debian.org>
and subject line Bug#604714: fixed in hdf5 1.8.7-2~exp1
has caused the Debian Bug report #604714,
regarding libhdf5-mpi-dev: Wrong MPI dependency on LAM platforms
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
604714: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=604714
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libhdf5-mpi-dev
Version: 1.8.4-patch1-2
Severity: important
Tags: patch
Greetings,
The libhdf5-mpi-dev package depends on libopenmpi-dev whether the
platform defaults to openmpi or lam. This is because it checks
the /etc/alternatives symlink to mpi, which will always point to openmpi
for hdf5, because it build-depends on all of the MPI implementations,
and OpenMPI has the highest priority.
(This was my mistake in copying the old PETSc MPI rule; PETSc's build
process installs only the arch's default MPI so there's only
one /etc/alternatives candidate.)
The attached patch vs. current SVN checks the dependency of the
mpi-default-dev package instead, so it is always consistent with
mpi-defaults.
Thanks,
Adam
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Index: trunk/debian/changelog
===================================================================
--- trunk/debian/changelog (revision 2951)
+++ trunk/debian/changelog (working copy)
@@ -1,3 +1,11 @@
+hdf5 (1.8.4-patch1-3) unstable; urgency=low
+
+ [ Adam C. Powell, IV ]
+ * Correct the libhdf5-mpi-dev dependency on the default MPI version
+ (closes: #6xxxxx).
+
+ --
+
hdf5 (1.8.4-patch1-2) unstable; urgency=low
[ Adam C. Powell, IV ]
Index: trunk/debian/rules
===================================================================
--- trunk/debian/rules (revision 2951)
+++ trunk/debian/rules (working copy)
@@ -22,7 +22,7 @@
DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
DEB_BUILD_ARCH ?= $(shell dpkg-architecture -qDEB_BUILD_ARCH)
-DEFAULT_MPI=$(shell readlink /etc/alternatives/mpi | sed s/usr//g | sed s/include//g | sed s/lib//g | sed s/\\///g)
+DEFAULT_MPI=$(shell dpkg -s mpi-default-dev | grep Depends | sed "s/Depends: lib//" | sed "s/-dev//" | sed "s/lam4/lam/")
patch: patch-stamp
patch-stamp:
signature.asc
Description: This is a digitally signed message part
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.7-2~exp1
We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive:
hdf5-tools_1.8.7-2~exp1_i386.deb
to main/h/hdf5/hdf5-tools_1.8.7-2~exp1_i386.deb
hdf5_1.8.7-2~exp1.debian.tar.gz
to main/h/hdf5/hdf5_1.8.7-2~exp1.debian.tar.gz
hdf5_1.8.7-2~exp1.dsc
to main/h/hdf5/hdf5_1.8.7-2~exp1.dsc
libhdf5-7_1.8.7-2~exp1_i386.deb
to main/h/hdf5/libhdf5-7_1.8.7-2~exp1_i386.deb
libhdf5-dev_1.8.7-2~exp1_i386.deb
to main/h/hdf5/libhdf5-dev_1.8.7-2~exp1_i386.deb
libhdf5-doc_1.8.7-2~exp1_all.deb
to main/h/hdf5/libhdf5-doc_1.8.7-2~exp1_all.deb
libhdf5-mpi-dev_1.8.7-2~exp1_i386.deb
to main/h/hdf5/libhdf5-mpi-dev_1.8.7-2~exp1_i386.deb
libhdf5-mpich2-7_1.8.7-2~exp1_i386.deb
to main/h/hdf5/libhdf5-mpich2-7_1.8.7-2~exp1_i386.deb
libhdf5-mpich2-dev_1.8.7-2~exp1_i386.deb
to main/h/hdf5/libhdf5-mpich2-dev_1.8.7-2~exp1_i386.deb
libhdf5-openmpi-7_1.8.7-2~exp1_i386.deb
to main/h/hdf5/libhdf5-openmpi-7_1.8.7-2~exp1_i386.deb
libhdf5-openmpi-dev_1.8.7-2~exp1_i386.deb
to main/h/hdf5/libhdf5-openmpi-dev_1.8.7-2~exp1_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 604...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sylvestre Ledru <sylves...@debian.org> (supplier of updated hdf5 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 04 Aug 2011 14:06:18 +0200
Source: hdf5
Binary: libhdf5-7 libhdf5-dev libhdf5-openmpi-7 libhdf5-openmpi-dev
libhdf5-mpich2-7 libhdf5-mpich2-dev libhdf5-mpi-dev libhdf5-doc hdf5-tools
Architecture: source all i386
Version: 1.8.7-2~exp1
Distribution: experimental
Urgency: low
Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
Changed-By: Sylvestre Ledru <sylves...@debian.org>
Description:
hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH2 ve
libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2
versio
libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH2 ve
libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files -
OpenMPI versi
libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
OpenMPI v
Closes: 566541 604714 627896 636185
Changes:
hdf5 (1.8.7-2~exp1) experimental; urgency=low
.
* Rename libhdf5-serial-* to libhdf5 to avoid confusion and to highlight
which one is the default version (Closes: #566541)
* hdf5 packages renamed to use soname versionning. Upstream looks like ready
to support them correctly. Therefor, here is the changes:
libhdf5-serial-1.8.7 => libhdf5-7
libhdf5-openmpi-1.8.7 => libhdf5-openmpi-7
libhdf5-mpich2-1.8.7 => libhdf5-mpich2-7
* C, C++ and Fortran symbol files introduced (mpich2, openmpi and serial).
* Support of hurd-i386. Thanks to Pino Toscano for doing the work.
(Closes: #627896)
* Drop the useless lam4-dev dependency. Thanks to Pino Toscano & Adam C
Powell IV (Closes: #604714)
* armel/arm added to the archs of libhdf5-openmpi-dev (Closes: #636185)
* .la file are no longer shipped
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