Your message dated Thu, 11 Apr 2013 16:47:55 +0000
with message-id <[email protected]>
and subject line Bug#701504: fixed in hdf5 1.8.10-patch1-1~exp3
has caused the Debian Bug report #701504,
regarding hdf5: FTBFS on powerpc, powerpcspe, and ppc64 due to symbols files
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
701504: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=701504
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: hdf5
Version: 1.8.10-patch1-1~exp2
Severity: normal
Tags: patch experimental
User: [email protected]
Usertags: powerpcspe
Hi,
the current version of hdf5 in experimental FTBFS on powerpc and powerpcspe[1]
like this:
dh_fixperms -s
dh_makeshlibs -plibhdf5-openmpi-7 -V libhdf5-openmpi-7
dpkg-gensymbols: warning: some symbols or patterns disappeared in the symbols
file: see diff output below
dpkg-gensymbols: warning: debian/libhdf5-openmpi-7/DEBIAN/symbols doesn't match
completely debian/libhdf5-openmpi-7.symbols
--- debian/libhdf5-openmpi-7.symbols (libhdf5-openmpi-7_1.8.8-9_powerpcspe)
+++ dpkg-gensymbolsYK6HlU 2013-02-18 10:08:54.869572100 +0000
@@ -2055,7 +2055,7 @@
H5T_conv_ldouble_double@Base 1.8.7
H5T_conv_ldouble_float@Base 1.8.7
H5T_conv_ldouble_int@Base 1.8.7
- (arch=!powerpc)H5T_conv_ldouble_llong@Base 1.8.7
+#MISSING: 1.8.8-9# (arch=!powerpc)H5T_conv_ldouble_llong@Base 1.8.7
H5T_conv_ldouble_long@Base 1.8.7
H5T_conv_ldouble_schar@Base 1.8.7
H5T_conv_ldouble_short@Base 1.8.7
@@ -2067,7 +2067,7 @@
H5T_conv_llong_double@Base 1.8.7
H5T_conv_llong_float@Base 1.8.7
H5T_conv_llong_int@Base 1.8.7
- (arch=!powerpc)H5T_conv_llong_ldouble@Base 1.8.7
+#MISSING: 1.8.8-9# (arch=!powerpc)H5T_conv_llong_ldouble@Base 1.8.7
H5T_conv_llong_long@Base 1.8.7
H5T_conv_llong_schar@Base 1.8.7
H5T_conv_llong_short@Base 1.8.7
[...]
The attached hdf5-experimental.patch fixes this. I tested this to build also on
amd64 to prevent regressions.
Also, I'm attaching hdf5-unstable.patch for reference which fixes #694427
(building hdf5 in unstable's 1.8.8-9) which was supposed to be fixed (done) in
experimental.
Thanks in advance,
Roland
[1] http://wiki.debian.org/PowerPCSPEPort
-- System Information:
Debian Release: 7.0
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.7.0 (SMP w/4 CPU cores)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) (ignored: LC_ALL
set to en_GB.UTF-8)
Shell: /bin/sh linked to /bin/dash
--- hdf5-1.8.10-patch1/debian/libhdf5-openmpi-7.symbols.orig 2013-02-23 15:15:38.294002254 +0000
+++ hdf5-1.8.10-patch1/debian/libhdf5-openmpi-7.symbols 2013-02-23 15:16:05.573998796 +0000
@@ -2138,7 +2138,6 @@
H5T__conv_ldouble_double@Base 1.8.10
H5T__conv_ldouble_float@Base 1.8.10
H5T__conv_ldouble_int@Base 1.8.10
- H5T__conv_ldouble_llong@Base 1.8.10
H5T__conv_ldouble_long@Base 1.8.10
H5T__conv_ldouble_schar@Base 1.8.10
H5T__conv_ldouble_short@Base 1.8.10
@@ -2150,7 +2149,6 @@
H5T__conv_llong_double@Base 1.8.10
H5T__conv_llong_float@Base 1.8.10
H5T__conv_llong_int@Base 1.8.10
- H5T__conv_llong_ldouble@Base 1.8.10
H5T__conv_llong_long@Base 1.8.10
H5T__conv_llong_schar@Base 1.8.10
H5T__conv_llong_short@Base 1.8.10
--- hdf5-1.8.10-patch1/debian/libhdf5-mpich2-7.symbols.orig 2013-02-23 18:33:44.107930520 +0000
+++ hdf5-1.8.10-patch1/debian/libhdf5-mpich2-7.symbols 2013-02-23 18:34:30.891931268 +0000
@@ -2138,7 +2138,6 @@
H5T__conv_ldouble_double@Base 1.8.10
H5T__conv_ldouble_float@Base 1.8.10
H5T__conv_ldouble_int@Base 1.8.10
- H5T__conv_ldouble_llong@Base 1.8.10
H5T__conv_ldouble_long@Base 1.8.10
H5T__conv_ldouble_schar@Base 1.8.10
H5T__conv_ldouble_short@Base 1.8.10
@@ -2150,7 +2149,6 @@
H5T__conv_llong_double@Base 1.8.10
H5T__conv_llong_float@Base 1.8.10
H5T__conv_llong_int@Base 1.8.10
- H5T__conv_llong_ldouble@Base 1.8.10
H5T__conv_llong_long@Base 1.8.10
H5T__conv_llong_schar@Base 1.8.10
H5T__conv_llong_short@Base 1.8.10
--- hdf5-1.8.10-patch1/debian/libhdf5-7.symbols.orig 2013-02-23 18:36:11.735934371 +0000
+++ hdf5-1.8.10-patch1/debian/libhdf5-7.symbols 2013-02-23 18:36:59.027934488 +0000
@@ -2020,7 +2020,6 @@
H5T__conv_ldouble_double@Base 1.8.7
H5T__conv_ldouble_float@Base 1.8.7
H5T__conv_ldouble_int@Base 1.8.7
- H5T__conv_ldouble_llong@Base 1.8.7
H5T__conv_ldouble_long@Base 1.8.7
H5T__conv_ldouble_schar@Base 1.8.7
H5T__conv_ldouble_short@Base 1.8.7
@@ -2032,7 +2031,6 @@
H5T__conv_llong_double@Base 1.8.7
H5T__conv_llong_float@Base 1.8.7
H5T__conv_llong_int@Base 1.8.7
- H5T__conv_llong_ldouble@Base 1.8.7
H5T__conv_llong_long@Base 1.8.7
H5T__conv_llong_schar@Base 1.8.7
H5T__conv_llong_short@Base 1.8.7
diff -ruN hdf5-1.8.8.backup/debian/control hdf5-1.8.8/debian/control
--- hdf5-1.8.8.backup/debian/control 2012-03-08 11:18:22.000000000 +0100
+++ hdf5-1.8.8/debian/control 2012-11-26 11:22:14.242636329 +0100
@@ -76,7 +76,7 @@
Package: libhdf5-openmpi-7
Section: libs
Priority: extra
-Architecture: alpha armel armhf amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
+Architecture: alpha armel armhf amd64 i386 ia64 powerpc powerpcspe sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
Depends: ${shlibs:Depends}, ${misc:Depends}
Conflicts: libhdf5-7, libhdf5-1.8,
libhdf5-1.8.4, libhdf5-openmpi-1.8.4, libhdf5-1.8.6, libhdf5-openmpi-1.8.6,
@@ -95,7 +95,7 @@
Package: libhdf5-openmpi-dev
Section: libdevel
Priority: extra
-Architecture: alpha armel armhf amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
+Architecture: alpha armel armhf amd64 i386 ia64 powerpc powerpcspe sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
Depends: libhdf5-openmpi-7 (= ${binary:Version}), zlib1g-dev,
libjpeg-dev, libopenmpi-dev, ${misc:Depends}, hdf5-helpers
Conflicts: libhdf5-dev
@@ -112,7 +112,7 @@
Package: libhdf5-openmpi-7-dbg
Section: debug
Priority: extra
-Architecture: alpha armel armhf amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
+Architecture: alpha armel armhf amd64 i386 ia64 powerpc powerpcspe sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
Depends: ${shlibs:Depends}, ${misc:Depends},
libhdf5-openmpi-7 (= ${binary:Version}),
Description: Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package
diff -ruN hdf5-1.8.8.backup/debian/libhdf5-7.symbols hdf5-1.8.8/debian/libhdf5-7.symbols
--- hdf5-1.8.8.backup/debian/libhdf5-7.symbols 2012-02-24 11:15:58.000000000 +0100
+++ hdf5-1.8.8/debian/libhdf5-7.symbols 2012-11-26 11:23:36.758656795 +0100
@@ -2015,7 +2015,7 @@
H5T_conv_ldouble_double@Base 1.8.7
H5T_conv_ldouble_float@Base 1.8.7
H5T_conv_ldouble_int@Base 1.8.7
- (arch=!powerpc !sh4)H5T_conv_ldouble_llong@Base 1.8.7
+ (arch=!powerpc !powerpcspe !sh4)H5T_conv_ldouble_llong@Base 1.8.7
H5T_conv_ldouble_long@Base 1.8.7
H5T_conv_ldouble_schar@Base 1.8.7
H5T_conv_ldouble_short@Base 1.8.7
@@ -2027,7 +2027,7 @@
H5T_conv_llong_double@Base 1.8.7
H5T_conv_llong_float@Base 1.8.7
H5T_conv_llong_int@Base 1.8.7
- (arch=!powerpc !sh4)H5T_conv_llong_ldouble@Base 1.8.7
+ (arch=!powerpc !powerpcspe !sh4)H5T_conv_llong_ldouble@Base 1.8.7
H5T_conv_llong_long@Base 1.8.7
H5T_conv_llong_schar@Base 1.8.7
H5T_conv_llong_short@Base 1.8.7
@@ -2107,7 +2107,7 @@
H5T_conv_ullong_float@Base 1.8.7
H5T_conv_ullong_int@Base 1.8.7
H5T_conv_ullong_ldouble@Base 1.8.7
- (arch=!armel !armhf !alpha !sparc !mipsel !powerpc !sh4)H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!armel !armhf !alpha !sparc !mipsel !powerpc !powerpcspe !sh4)H5T_conv_ullong_ldouble@Base 1.8.7
H5T_conv_ullong_llong@Base 1.8.7
H5T_conv_ullong_long@Base 1.8.7
H5T_conv_ullong_schar@Base 1.8.7
diff -ruN hdf5-1.8.8.backup/debian/libhdf5-mpich2-7.symbols hdf5-1.8.8/debian/libhdf5-mpich2-7.symbols
--- hdf5-1.8.8.backup/debian/libhdf5-mpich2-7.symbols 2012-01-31 15:02:05.000000000 +0100
+++ hdf5-1.8.8/debian/libhdf5-mpich2-7.symbols 2012-11-26 11:24:20.902667571 +0100
@@ -2056,7 +2056,7 @@
H5T_conv_ldouble_double@Base 1.8.7
H5T_conv_ldouble_float@Base 1.8.7
H5T_conv_ldouble_int@Base 1.8.7
- (arch=!powerpc)H5T_conv_ldouble_llong@Base 1.8.7
+ (arch=!powerpc !powerpcspe)H5T_conv_ldouble_llong@Base 1.8.7
H5T_conv_ldouble_long@Base 1.8.7
H5T_conv_ldouble_schar@Base 1.8.7
H5T_conv_ldouble_short@Base 1.8.7
@@ -2068,7 +2068,7 @@
H5T_conv_llong_double@Base 1.8.7
H5T_conv_llong_float@Base 1.8.7
H5T_conv_llong_int@Base 1.8.7
- (arch=!powerpc)H5T_conv_llong_ldouble@Base 1.8.7
+ (arch=!powerpc !powerpcspe)H5T_conv_llong_ldouble@Base 1.8.7
H5T_conv_llong_long@Base 1.8.7
H5T_conv_llong_schar@Base 1.8.7
H5T_conv_llong_short@Base 1.8.7
@@ -2147,7 +2147,7 @@
H5T_conv_ullong_double@Base 1.8.7
H5T_conv_ullong_float@Base 1.8.7
H5T_conv_ullong_int@Base 1.8.7
- (arch=!mipsel !armel !armhf !alpha !powerpc !sh4)H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!mipsel !armel !armhf !alpha !powerpc !powerpcspe !sh4)H5T_conv_ullong_ldouble@Base 1.8.7
H5T_conv_ullong_llong@Base 1.8.7
H5T_conv_ullong_long@Base 1.8.7
H5T_conv_ullong_schar@Base 1.8.7
diff -ruN hdf5-1.8.8.backup/debian/libhdf5-openmpi-7.symbols hdf5-1.8.8/debian/libhdf5-openmpi-7.symbols
--- hdf5-1.8.8.backup/debian/libhdf5-openmpi-7.symbols 2012-01-18 15:10:07.000000000 +0100
+++ hdf5-1.8.8/debian/libhdf5-openmpi-7.symbols 2012-11-26 11:24:52.818674943 +0100
@@ -2055,7 +2055,7 @@
H5T_conv_ldouble_double@Base 1.8.7
H5T_conv_ldouble_float@Base 1.8.7
H5T_conv_ldouble_int@Base 1.8.7
- (arch=!powerpc)H5T_conv_ldouble_llong@Base 1.8.7
+ (arch=!powerpc !powerpcspe)H5T_conv_ldouble_llong@Base 1.8.7
H5T_conv_ldouble_long@Base 1.8.7
H5T_conv_ldouble_schar@Base 1.8.7
H5T_conv_ldouble_short@Base 1.8.7
@@ -2067,7 +2067,7 @@
H5T_conv_llong_double@Base 1.8.7
H5T_conv_llong_float@Base 1.8.7
H5T_conv_llong_int@Base 1.8.7
- (arch=!powerpc)H5T_conv_llong_ldouble@Base 1.8.7
+ (arch=!powerpc !powerpcspe)H5T_conv_llong_ldouble@Base 1.8.7
H5T_conv_llong_long@Base 1.8.7
H5T_conv_llong_schar@Base 1.8.7
H5T_conv_llong_short@Base 1.8.7
@@ -2146,7 +2146,7 @@
H5T_conv_ullong_double@Base 1.8.7
H5T_conv_ullong_float@Base 1.8.7
H5T_conv_ullong_int@Base 1.8.7
- (arch=!powerpc !armel !armhf !alpha)H5T_conv_ullong_ldouble@Base 1.8.7
+ (arch=!powerpc !powerpcspe !armel !armhf !alpha)H5T_conv_ullong_ldouble@Base 1.8.7
H5T_conv_ullong_llong@Base 1.8.7
H5T_conv_ullong_long@Base 1.8.7
H5T_conv_ullong_schar@Base 1.8.7
diff -ruN hdf5-1.8.8.backup/debian/rules hdf5-1.8.8/debian/rules
--- hdf5-1.8.8.backup/debian/rules 2012-03-08 11:09:08.000000000 +0100
+++ hdf5-1.8.8/debian/rules 2012-11-26 11:22:42.630643384 +0100
@@ -29,7 +29,7 @@
#ARCH_FLAG=-a
#ARCHS=any
ARCH_FLAG=-s
-ARCHS=alpha armel armhf amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
+ARCHS=alpha armel armhf amd64 i386 ia64 powerpc powerpcspe sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386
ifeq ($(DEB_HOST_ARCH),arm)
build_openmpi = no
--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.8.10-patch1-1~exp3
We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sylvestre Ledru <[email protected]> (supplier of updated hdf5 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 11 Apr 2013 15:40:53 +0200
Source: hdf5
Binary: libhdf5-7 libhdf5-7-dbg libhdf5-dev libhdf5-serial-dev
libhdf5-openmpi-7 libhdf5-openmpi-dev libhdf5-openmpi-7-dbg libhdf5-mpich2-7
libhdf5-mpich2-dev libhdf5-mpich2-7-dbg libhdf5-mpi-dev libhdf5-doc
hdf5-helpers hdf5-tools
Architecture: source all amd64
Version: 1.8.10-patch1-1~exp3
Distribution: experimental
Urgency: low
Maintainer: Debian GIS Project <[email protected]>
Changed-By: Sylvestre Ledru <[email protected]>
Description:
hdf5-helpers - Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial versio
libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial ve
libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH2 ve
libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2
versio
libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package
libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files -
MPICH2 ve
libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files -
OpenMPI versi
libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug
package
libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
OpenMPI v
libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files -
transitio
Closes: 701504
Changes:
hdf5 (1.8.10-patch1-1~exp3) experimental; urgency=low
.
* Fix the FTBFS on powerpc, powerpcspe, and ppc64
Many thanks to Hiroyuki Yamamoto & Roland Stigge
(Closes: #701504)
* Remove libhdf5-doc.doc-base (html doc is no longer provided)
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libhdf5-mpich2-dev_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-mpich2-7-dbg_1.8.10-patch1-1~exp3_amd64.deb
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hdf5-helpers_1.8.10-patch1-1~exp3_amd64.deb
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hdf5-tools_1.8.10-patch1-1~exp3_amd64.deb
Files:
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hdf5_1.8.10-patch1-1~exp3.dsc
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hdf5_1.8.10-patch1-1~exp3.debian.tar.gz
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libhdf5-doc_1.8.10-patch1-1~exp3_all.deb
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libhdf5-7_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-7-dbg_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-dev_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-serial-dev_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-openmpi-7_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-openmpi-dev_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-openmpi-7-dbg_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-mpich2-7_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-mpich2-dev_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-mpich2-7-dbg_1.8.10-patch1-1~exp3_amd64.deb
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libhdf5-mpi-dev_1.8.10-patch1-1~exp3_amd64.deb
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hdf5-helpers_1.8.10-patch1-1~exp3_amd64.deb
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hdf5-tools_1.8.10-patch1-1~exp3_amd64.deb
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