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commit 6e531ddb84338b80667b0f6017ed4d859fd4be04 Merge: 17304ff 9f42f73 Author: Bas Couwenberg <[email protected]> Date: Fri Sep 30 11:45:36 2016 +0200 Merge tag 'upstream/1.12.0' Upstream version 1.12.0 .travis.yml | 29 +- .travis_testing.sh | 2 +- CHANGELOG.txt | 112 + doc/source/conf.py | 4 +- doc/source/index.rst | 2 +- doc/source/library/contrib/index.rst | 10 +- doc/source/library/spreg/index.rst | 2 + doc/source/library/spreg/sur.rst | 12 + doc/source/library/spreg/sur_error.rst | 12 + doc/source/library/spreg/sur_lag.rst | 12 + pysal/.gitignore | 10 + pysal/__init__.py | 23 +- pysal/cg/comparators.py | 153 + pysal/cg/shapes.py | 40 +- pysal/cg/sphere.py | 152 +- pysal/cg/tests/test_sphere.py | 109 + pysal/common.py | 96 +- pysal/contrib/README.rst | 10 +- pysal/contrib/geotable/__init__.py | 1 + pysal/contrib/geotable/config.py | 64 + pysal/contrib/geotable/io.py | 38 + pysal/contrib/geotable/ops/__init__.py | 2 + pysal/contrib/geotable/ops/_accessors.py | 45 + pysal/contrib/geotable/ops/_shapely.py | 174 + pysal/contrib/geotable/ops/atomic.py | 10 + pysal/contrib/geotable/ops/tabular.py | 118 + .../geotable/ops}/tests/__init__.py | 0 pysal/contrib/geotable/ops/tests/test_accessors.py | 356 + pysal/contrib/geotable/ops/tests/test_shapely.py | 215 + pysal/contrib/geotable/ops/tests/test_tabular.py | 72 + .../geotable}/tests/__init__.py | 0 pysal/contrib/geotable/tests/test_utils.py | 13 + pysal/contrib/geotable/utils.py | 70 + pysal/contrib/glm/README.md | 30 + pysal/contrib/glm/__init__.py | 4 + pysal/contrib/glm/base.py | 408 + pysal/contrib/glm/family.py | 1845 +++ pysal/contrib/glm/glm.py | 365 + pysal/contrib/glm/iwls.py | 79 + pysal/contrib/glm/links.py | 953 ++ pysal/contrib/glm/tests/test_glm.py | 993 ++ pysal/contrib/glm/utils.py | 350 + pysal/contrib/glm/varfuncs.py | 284 + pysal/contrib/network/klincs.py | 18 +- pysal/contrib/network/lincs.py | 52 +- pysal/contrib/pdio/__init__.py | 4 + .../{pdutilities/dbf_utilities.py => pdio/dbf.py} | 0 .../file_utilities.py => pdio/file.py} | 4 +- .../{pdutilities/shp_utilities.py => pdio/shp.py} | 0 pysal/contrib/pdutilities/__init__.py | 4 - pysal/contrib/shapely_ext.py | 4 +- pysal/contrib/spint/README.md | 48 +- pysal/contrib/spint/__init__.py | 6 + pysal/contrib/spint/count_model.py | 191 + pysal/contrib/spint/dispersion.py | 102 + pysal/contrib/spint/gravity.py | 1670 ++- pysal/contrib/spint/gravity_stats.py | 144 - pysal/contrib/spint/notebooks/4d_distance.ipynb | 531 + pysal/contrib/spint/notebooks/Gaussian_SAR.ipynb | 791 ++ pysal/contrib/spint/notebooks/IV_FLOWS.ipynb | 195 + .../contrib/spint/notebooks/NYC_Bike_Example.ipynb | 661 + .../contrib/spint/notebooks/New_DistanceBand.ipynb | 326 + pysal/contrib/spint/notebooks/ODW_example.ipynb | 288 + pysal/contrib/spint/notebooks/OD_weights.ipynb | 254 + pysal/contrib/spint/notebooks/Vec_SA_Test.ipynb | 389 + pysal/contrib/spint/notebooks/autograd_test.ipynb | 128 + .../contrib/spint/notebooks/dispersion_test.ipynb | 455 + .../examples/Example_NYCBikes_AllFeatures.ipynb | 919 ++ pysal/contrib/spint/notebooks/glm_speed.ipynb | 360 + pysal/contrib/spint/notebooks/local_SI.ipynb | 232 + pysal/contrib/spint/notebooks/netW.ipynb | 305 + .../spint/notebooks/sparse_categorical.ipynb | 184 + .../notebooks/sparse_categorical_bottleneck.ipynb | 79 + .../spint/notebooks/sparse_categorical_speed.ipynb | 596 + pysal/contrib/spint/notebooks/sparse_grav.ipynb | 457 + .../spint/notebooks/sparse_scipy_optim.ipynb | 165 + .../spint/notebooks/sparse_vs_dense_grav.ipynb | 499 + pysal/contrib/spint/notebooks/test_grav.ipynb | 293 + .../contrib/spint/notebooks/validate_gravity.ipynb | 966 ++ pysal/contrib/spint/tests/test_count_model.py | 87 + pysal/contrib/spint/tests/test_dispersion.py | 47 + pysal/contrib/spint/tests/test_gravity.py | 803 +- pysal/contrib/spint/tests/test_gravity_stats.py | 193 - pysal/contrib/spint/tests/test_vec_SA.py | 54 + pysal/contrib/spint/utils.py | 120 + pysal/contrib/spint/vec_SA.py | 342 + pysal/contrib/viz/plot.py | 52 + pysal/core/IOHandlers/__init__.py | 5 + pysal/core/IOHandlers/db.py | 88 + pysal/core/IOHandlers/geoda_txt.py | 2 +- pysal/core/IOHandlers/pyDbfIO.py | 6 +- pysal/core/IOHandlers/tests/test_db.py | 55 + pysal/core/Tables.py | 23 +- pysal/core/tests/test_Tables.py | 29 + pysal/esda/gamma.py | 25 +- pysal/esda/geary.py | 53 +- pysal/esda/getisord.py | 111 +- pysal/esda/join_counts.py | 60 +- pysal/esda/mapclassify.py | 308 +- pysal/esda/mixture_smoothing.py | 12 +- pysal/esda/moran.py | 394 +- pysal/esda/smoothing.py | 481 +- pysal/esda/tabular.py | 306 + pysal/esda/tests/test_gamma.py | 31 +- pysal/esda/tests/test_geary.py | 25 +- pysal/esda/tests/test_getisord.py | 30 +- pysal/esda/tests/test_join_counts.py | 27 +- pysal/esda/tests/test_mapclassify.py | 35 +- pysal/esda/tests/test_moran.py | 70 +- pysal/esda/tests/test_smoothing.py | 399 +- pysal/examples/Polygon_Holes/Polygon_Holes.cpg | 1 + pysal/examples/Polygon_Holes/Polygon_Holes.dbf | Bin 0 -> 498 bytes pysal/examples/Polygon_Holes/Polygon_Holes.prj | 1 + pysal/examples/Polygon_Holes/Polygon_Holes.qpj | 1 + pysal/examples/Polygon_Holes/Polygon_Holes.shp | Bin 0 -> 1528 bytes pysal/examples/Polygon_Holes/Polygon_Holes.shx | Bin 0 -> 124 bytes pysal/examples/nyc_bikes/nyc_bikes_ct.csv | 14043 +++++++++++++++++++ pysal/examples/nyc_bikes/nyct2010.dbf | Bin 0 -> 381602 bytes pysal/examples/nyc_bikes/nyct2010.prj | 1 + pysal/examples/nyc_bikes/nyct2010.shp | Bin 0 -> 2648092 bytes pysal/examples/nyc_bikes/nyct2010.shp.xml | 1 + pysal/examples/nyc_bikes/nyct2010.shx | Bin 0 -> 17428 bytes pysal/inequality/gini.py | 89 +- pysal/inequality/tests/test_gini.py | 33 + pysal/network/Network_Usage.ipynb | 689 + pysal/network/analysis.py | 50 +- pysal/network/network.py | 541 +- pysal/network/tests/test_network.py | 15 +- pysal/network/util.py | 130 +- pysal/spatial_dynamics/markov.py | 648 +- pysal/spatial_dynamics/tests/test_markov.py | 107 +- pysal/spreg/diagnostics_sur.py | 60 +- pysal/spreg/ml_error.py | 23 +- pysal/spreg/ml_lag.py | 24 +- pysal/spreg/sputils.py | 275 + pysal/spreg/sur.py | 155 +- pysal/spreg/tests/skip.py | 6 + pysal/spreg/tests/test_diagnostics.py | 1 - pysal/spreg/tests/test_ml_error.py | 73 +- pysal/spreg/tests/test_ml_error_regimes.py | 6 +- pysal/spreg/tests/test_ml_lag.py | 65 +- pysal/spreg/tests/test_ml_lag_regimes.py | 7 +- pysal/spreg/tests/test_sputils.py | 134 + pysal/spreg/tests/test_sur_error.py | 32 +- pysal/spreg/user_output.py | 39 +- pysal/spreg/utils.py | 228 +- pysal/version.py | 4 +- pysal/weights/Contiguity.py | 429 +- pysal/weights/Distance.py | 541 +- pysal/weights/Wsets.py | 4 +- pysal/weights/__init__.py | 5 - pysal/weights/_contW_binning.py | 205 +- pysal/weights/_contW_lists.py | 90 + pysal/weights/_contW_rtree.py | 10 - pysal/weights/spintW.py | 254 + pysal/weights/tests/test_Contiguity.py | 145 +- pysal/weights/tests/test_Distance.py | 421 +- pysal/weights/tests/test__contW_binning.py | 10 +- ...test__contW_binning.py => test__contW_lists.py} | 10 +- pysal/weights/tests/test_spintW.py | 173 + pysal/weights/tests/test_weights.py | 4 +- pysal/weights/user.py | 171 +- pysal/weights/util.py | 49 +- pysal/weights/weights.py | 76 +- pysal/weights/weights_from_geojson.ipynb | 311 - requirements_plus.txt | 12 + setup.py | 4 +- tools/github_stats.py | 7 +- travis.txt | 4 +- 169 files changed, 39545 insertions(+), 3744 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-grass/pysal.git _______________________________________________ Pkg-grass-devel mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-grass-devel
