Author: egonw-guest Date: 2006-02-15 09:41:03 +0000 (Wed, 15 Feb 2006) New Revision: 1913
Added: trunk/cdk/ trunk/cdk/debian/ trunk/cdk/debian/README.Debian trunk/cdk/debian/TODO trunk/cdk/debian/cdk.copyright trunk/cdk/debian/cdk.dirs trunk/cdk/debian/cdk.install trunk/cdk/debian/cdk.manpages trunk/cdk/debian/changelog trunk/cdk/debian/compat trunk/cdk/debian/control trunk/cdk/debian/libcdk-java-doc.copyright trunk/cdk/debian/libcdk-java-doc.dirs trunk/cdk/debian/libcdk-java-doc.install trunk/cdk/debian/libcdk-java.copyright trunk/cdk/debian/libcdk-java.dirs trunk/cdk/debian/libcdk-java.install trunk/cdk/debian/rules Log: Added the debian/ for CDK.sf.net. Building on Daniel Leiderts deb packages, and now using CDBS. Its not fully working yet, but putting it here allows collaborate work Added: trunk/cdk/debian/README.Debian =================================================================== --- trunk/cdk/debian/README.Debian 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/README.Debian 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,6 @@ +cdk for Debian +-------------- + +<possible notes regarding this package - if none, delete this file> + + -- Daniel Leidert <[EMAIL PROTECTED]>, Sat, 5 Feb 2005 19:42:32 +0100 Added: trunk/cdk/debian/TODO =================================================================== --- trunk/cdk/debian/TODO 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/TODO 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,8 @@ +TODO list for cdk in Debian + +* Patch the build.xml so that the JavaDoc taglets Make*FilesTaglet in doc/javadoc/source compile with gjdoc + +* Make a binary package for JChemPaint, see the build-jchempaint.xml + +* Complete dependencies and remove optional library dependencies from contrib, such as batik + Added: trunk/cdk/debian/cdk.copyright =================================================================== --- trunk/cdk/debian/cdk.copyright 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/cdk.copyright 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,31 @@ +This package was debianized by Daniel Leidert (dale) <[EMAIL PROTECTED]>. + +It was downloaded from http://cdk.sourceforge.net. + +Copyright: + + Copyrighted 1997-2006 by The CDK Development Team + +Upstream Authors: + + Egon Willighagen, Daniel Leidert + The CDK Development Team + +License: LGPL + + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 2.1 of the License, or (at your option) any later version. + + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public + License along with this library; if not, write to the Free Software + Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + +On Debian systems, a copy of the GNU Lesser General Public License, version +2.1, is available as the file /usr/share/common-licenses/copyright/LGPL. Added: trunk/cdk/debian/cdk.dirs =================================================================== --- trunk/cdk/debian/cdk.dirs 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/cdk.dirs 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,2 @@ +usr/bin +usr/share/bug/cdk Added: trunk/cdk/debian/cdk.install =================================================================== --- trunk/cdk/debian/cdk.install 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/cdk.install 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,3 @@ +cdk-bin/* usr/bin + +debian/reportbug/control usr/share/bug/cdk Added: trunk/cdk/debian/cdk.manpages =================================================================== --- trunk/cdk/debian/cdk.manpages 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/cdk.manpages 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,10 @@ +cdk-man/cdk-dbadmin.1 +cdk-man/cdk-download.1 +cdk-man/cdk-fileconvert.1 +cdk-man/cdk-fingerprinter.1 +cdk-man/cdk-guessformat.1 +cdk-man/cdk-iupacname.1 +cdk-man/cdk-substructure.1 +cdk-man/cdk-test.1 +cdk-man/cdk-validate.1 +cdk-man/cdk-view.1 Added: trunk/cdk/debian/changelog =================================================================== --- trunk/cdk/debian/changelog 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/changelog 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,188 @@ +cdk (20060211-1) unstable; urgency=low + + * New upstream release + * Removed JOELib from package + + -- Egon Willighagen <[EMAIL PROTECTED]> Sat, 11 Feb 2006 20:47:00 +0100 + +cdk (20050125-0dl0) unstable; urgency=low + + * Completely rewritten package process. + - includes joelib source + - packaging joelib with (API-)documentation + - massive using of dpatch + - excluding common stuff (copy it into /usr/share/java, if you need it), + means: removed libcdk-java-common + * Fixes: + - rewritten manpages for cdk binaries + - better JAVA detection for cdk binaries + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Sat, 5 Feb 2005 19:44:26 +0100 + +cdk (20041015-1) unstable; urgency=low + + * New upstream release + fix for wrong element types. + * Moved cdk to contrib/utils. + * Moved libcdk-java to contrib/libs. + * Moved libcdk-java-doc to contrib/doc. + * Moved libcdk-java-common to non-free/libs. + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Sat, 13 Nov 2004 03:04:22 +0100 + +cdk (20040917-2) unstable; urgency=low + + * New build. + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Sun, 10 Oct 2004 20:01:48 +0200 + +cdk (20040917-1) unstable; urgency=low + + * New Upstream release. + * Build against joelib-20040827. + * Package was reamed to cdk (use 'apt-get source cdk' to get the source), but + it is still split into 4 packages. + * Adjusted control-file and dependencies. + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Fri, 17 Sep 2004 23:26:46 +0200 + +libcdk-java (20040626-2+3) unstable; urgency=low + + * [NEWS] package-split. + * Added package cdk, which contains the shell wrappers (+ manpages). + * Added control-files for reportbug. + * Clean-up Makefile and rules, some changes in debian. + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Fri, 20 Aug 2004 23:13:38 +0200 + +libcdk-java (20040626-2+2) unstable; urgency=low + + * Added a JavaDoc-package for the CDK-API (libcdk-java-doc). + * Adjusted debian/control. + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Fri, 20 Aug 2004 12:22:51 +0200 + +libcdk-java (20040626-2+1) unstable; urgency=low + + * Build with Java3D and JOElib. + * Now suggests the different plugin-packages, not libcdk-java-plugins. + * Symlinks are now made "the Debian way". + * Split package - recommends libcdk-java-common. + * libcdk-java-common pre-depends on libcdk-java, to solve the upgrade + problem with the common-libs in /usr/share/libcdk-java/lib. + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Fri, 13 Aug 2004 03:19:59 +0200 + +libcdk-java (20040626-1.1) unstable; urgency=low + + * Now suggests libcdk-java-plugins. + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Sun, 10 Aug 2004 22:41:15 +0200 + +libcdk-java (20040626-1) unstable; urgency=low + + * New upstream release. + * Now there is only one package called libcdk-java providing all libraries + and shell scripts, former provided by cdk & libcdk-java. + * libcdk-java is now built against ...(libraries) + + -- Daniel Leidert (dale) <[EMAIL PROTECTED]> Sun, 8 Aug 2004 22:42:33 +0200 + +cdk (20040513) unstable; urgency=low + + * New upstream release + * Now uses gjdoc instead of javadoc (see patches/) + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Thu, 13 May 2004 19:44:00 +0100 + +cdk (20040420cvs-2) unstable; urgency=low + + * Now conform Standards Version 3.6.1 (control) + * Split up package into two binary packages: libcdk-java and cdk + * Now depends on debhelper (rules) + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Tue, 20 Apr 2004 13:27:00 +0100 + +cdk (20040420cvs-1) unstable; urgency=low + + * New release based on CVS + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Tue, 20 Apr 2004 11:36:00 +0100 + +cdk (20040202-1) unstable; urgency=low + + * New upstream release + * Now depends on a lot more Debian packages (control) + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Tue, 03 Feb 2004 11:47:00 +0100 + +cdk (20040120-2) unstable; urgency=low + + * Now build depends on gcj instead of j2sdk1.4 + * Now depends on kaffe instead of j2se1.4 + * Added missing xsltproc build dependency (control) + * Now stores extra jar libraries in the correct dir (/usr/share/cdk/lib) + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Wed, 21 Jan 2004 15:33:00 +0100 + +cdk (20040120-1) unstable; urgency=low + + * New upstream release 20040120 + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Tue, 20 Jan 2004 10:30:00 +0100 + +cdk (20040112-2) unstable; urgency=low + + * Fixed description title name of CDK (control) + * Hopefully moved package to arch = all (control) + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Mon, 12 Jan 2004 17:59:00 +0100 + +cdk (20040112-1) unstable; urgency=low + + * New upstream release taken from CVS + * Fixed Depends to have java2-runtime (control) + * Added list of contributors to AUTHORS + * More information in README + * Removed CVS dir from debian/patches + * Added upstream ChangeLog + * Moved package to science subsection (control) + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Mon, 12 Jan 2004 12:46:00 +0100 + +cdk (20031017-1) unstable; urgency=low + + * New upstream release + * Now uses log4j*.jar from liblog4j1.2-java package + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Fri, 17 Oct 2003 11:11:00 +0100 + +cdk (20030702-1) unstable; urgency=low + + * New upstream release + * Put into correct Section (control) + * Now conform Standards Version 3.5.9 (control) + * Removed duplication in Description (control) + * Added depends on j2se1.4 (control) + * Fixed building system + * Now uses junit.jar from junit package + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Sat, 03 Jul 2003 12:11:00 +0100 + +cdk (20020920-1) unstable; urgency=low + + * New upstream release + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Sat, 20 Sep 2002 21:58:43 +0100 + +cdk (20020831-1) unstable; urgency=low + + * New upstream version + * Merged libcdk, libcdkextra and cdk into one package + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Sun, 01 Sep 2002 20:34:11 +0100 + +cdk (20020805-1) unstable; urgency=low + + * New upstream version + + -- E.L. Willighagen (Egon) <[EMAIL PROTECTED]> Thu, 06 Aug 2002 19:59:29 +0200 Added: trunk/cdk/debian/compat =================================================================== --- trunk/cdk/debian/compat 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/compat 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1 @@ +4 Added: trunk/cdk/debian/control =================================================================== --- trunk/cdk/debian/control 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/control 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,46 @@ +Source: cdk +Section: contrib/libs +Priority: optional +Maintainer: Daniel Leidert (dale) <[EMAIL PROTECTED]> +Build-Depends-Indep: debhelper (>= 4.0.0), ant (>= 1.6), antlr, docbook-xsl (>= 1.66.1), javacc, kaffe | java2-compiler, libcommons-cli-java, libcrimson-java, libjdom0-java, liblog4j1.2-java, libmysql-java, libpgjava, libxerces2-java, xsltproc +Standards-Version: 3.6.1.1 + +Package: cdk +Section: contrib/utils +Architecture: all +Depends: libcdk-java (>= ${Source-Version}), perl, perl-base (>= 5.6.1) +Description: Shell wrappers for the Chemistry Development Kit (CDK) + The CDK is a library of Java classes used in computational and + information chemistry and in bioinformatics. It includes renderers, + file IO, SMILES generation/parsing, maximal common substructure + algorithms, fingerprinting and much, much more. + . + This package contains a set of shell wrappers to manipulate databases, + query structure informations, test the CDK-classes and many more. + +Package: libcdk-java +Section: contrib/libs +Architecture: all +Depends: j2re1.4 | java2-virtual-machine | java2-runtime +Suggests: jchempaint, jmol, cdk, libcdk-java-doc +Description: Chemistry Development Kit (CDK) Java libraries + The CDK is a library of Java classes used in computational and + information chemistry and in bioinformatics. It includes renderers, + file IO, SMILES generation/parsing, maximal common substructure + algorithms, fingerprinting and much, much more. + . + See the project page for more information: + http://cdk.sourceforge.net + +Package: libcdk-java-doc +Section: contrib/doc +Architecture: all +Suggests: libcdk-java +Description: API documentation of the the Chemistry Development Kit (CDK) + The CDK is a library of Java classes used in computational and + information chemistry and in bioinformatics. It includes renderers, + file IO, SMILES generation/parsing, maximal common substructure + algorithms, fingerprinting and much, much more. + . + This package contains the API documentation of the Chemistry Development + Kit (CDK) Java libraries. Added: trunk/cdk/debian/libcdk-java-doc.copyright =================================================================== --- trunk/cdk/debian/libcdk-java-doc.copyright 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/libcdk-java-doc.copyright 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,39 @@ +This package was debianized by Daniel Leidert (dale) <[EMAIL PROTECTED]>. + +It was downloaded from http://cdk.sourceforge.net. + +Copyright: + + Copyrighted 1997-2005 by The CDK Development Team + +Upstream Authors and Contributors: + + The CDK Development Team + (Ulrich Bauer, Miguel Rojas Cherto, Fabian Dortu, Matteo Floris, + Dan Gezelter, Rajarshi Guha, Yonquan Han, Kai Hartmann, + Christian Hoppe, Oliver Horlacher, Miguel Howard, Geert Josten, + Anatoli Krassavine, Stefan Kuhn, Daniel Leidert, Edgar Luttmann, + Nathana�l Mazuir, Stephan Michels, Peter Murray-Rust, Chris Pudney, + Jonathan Rienstra-Kiracofe, David Robinson, Bhupinder Sandhu, + Jean-Sebastien Senecal, Sulev Sild, Bradley Smith, + Christoph Steinbeck, Stephan Tomkinson, Joerg Wegner, + Stephane Werner, Egon Willighagen, Yong Zhang) + +License: LGPL + + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 2.1 of the License, or (at your option) any later version. + + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public + License along with this library; if not, write to the Free Software + Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + +On Debian systems, a copy of the GNU Lesser General Public License, version +2.1, is available as the file /usr/share/common-licenses/copyright/LGPL. Added: trunk/cdk/debian/libcdk-java-doc.dirs =================================================================== --- trunk/cdk/debian/libcdk-java-doc.dirs 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/libcdk-java-doc.dirs 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,2 @@ +usr/share/bug/libcdk-java-doc +usr/share/doc/libcdk-java-doc/apidoc Added: trunk/cdk/debian/libcdk-java-doc.install =================================================================== --- trunk/cdk/debian/libcdk-java-doc.install 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/libcdk-java-doc.install 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,3 @@ +build-tree/cdk/apidoc/* usr/share/doc/libcdk-java-doc/apidoc + +debian/reportbug/control usr/share/bug/libcdk-java-doc Added: trunk/cdk/debian/libcdk-java.copyright =================================================================== --- trunk/cdk/debian/libcdk-java.copyright 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/libcdk-java.copyright 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,39 @@ +This package was debianized by Daniel Leidert (dale) <[EMAIL PROTECTED]>. + +It was downloaded from http://cdk.sourceforge.net. + +Copyright: + + Copyrighted 1997-2005 by The CDK Development Team + +Upstream Authors and Contributors: + + The CDK Development Team + (Ulrich Bauer, Miguel Rojas Cherto, Fabian Dortu, Matteo Floris, + Dan Gezelter, Rajarshi Guha, Yonquan Han, Kai Hartmann, + Christian Hoppe, Oliver Horlacher, Miguel Howard, Geert Josten, + Anatoli Krassavine, Stefan Kuhn, Daniel Leidert, Edgar Luttmann, + Nathana�l Mazuir, Stephan Michels, Peter Murray-Rust, Chris Pudney, + Jonathan Rienstra-Kiracofe, David Robinson, Bhupinder Sandhu, + Jean-Sebastien Senecal, Sulev Sild, Bradley Smith, + Christoph Steinbeck, Stephan Tomkinson, Joerg Wegner, + Stephane Werner, Egon Willighagen, Yong Zhang) + +License: LGPL + + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 2.1 of the License, or (at your option) any later version. + + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public + License along with this library; if not, write to the Free Software + Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + +On Debian systems, a copy of the GNU Lesser General Public License, version +2.1, is available as the file /usr/share/common-licenses/copyright/LGPL. Added: trunk/cdk/debian/libcdk-java.dirs =================================================================== --- trunk/cdk/debian/libcdk-java.dirs 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/libcdk-java.dirs 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,2 @@ +usr/share/java +usr/share/bug/libcdk-java Added: trunk/cdk/debian/libcdk-java.install =================================================================== --- trunk/cdk/debian/libcdk-java.install 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/libcdk-java.install 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,3 @@ +build-tree/cdk/jar/cdk*.jar usr/share/java + +debian/reportbug/control usr/share/bug/libcdk-java Added: trunk/cdk/debian/rules =================================================================== --- trunk/cdk/debian/rules 2006-02-14 12:30:28 UTC (rev 1912) +++ trunk/cdk/debian/rules 2006-02-15 09:41:03 UTC (rev 1913) @@ -0,0 +1,63 @@ +#!/usr/bin/make -f + +include /usr/share/cdbs/1/rules/debhelper.mk +include /usr/share/cdbs/1/class/ant.mk +#include /usr/share/cdbs/1/rules/simple-patchsys.mk + +JAVA_HOME := /usr/lib/kaffe +JAVACMD := /usr/bin/kaffe +ANT_OPTS := -Xmx256m +ANT_HOME := /usr/share/ant +DEB_JARS := \ + ant-nodeps \ + javacc \ + vecmath1.2 \ + log4j-1.2 \ + commons-cli + +DEB_ANT_COMPILER := jikes +DEB_ANT_BUILD_TARGET := dist-all +DEB_ANT_JARS := \ + gnu-classpath-tools-gjdoc \ + com-sun-tools-doclets-Taglet \ + com-sun-javadoc + + +# Additional command-line arguments for Ant +ANT_ARGS := -verbose + +LIBRARY_PACKAGE := cdk +API_VERSION := 20060211 + +COMPONENTS := \ + applications \ + builder3d \ + core \ + data \ + experimental \ + extra \ + interfaces \ + io \ + io-jmol \ + libio-cml \ + pdb-cml \ + pdb \ + qsar-cml \ + qsar \ + render \ + standard \ + swing + +build/$(LIBRARY_PACKAGE):: + # Make manpages. + @cd debian/cdk-manpages && for mxml in "*.xml"; do \ + xsltproc /usr/share/xml/docbook/stylesheet/nwalsh/manpages/docbook.xsl $$mxml; \ + done + +install/lib$(LIBRARY_PACKAGE)-java:: + for COMPONENT in $(COMPONENTS); do \ + install -m 644 dist/jar/$(LIBRARY_PACKAGE)-$$COMPONENT.jar \ + debian/lib$(LIBRARY_PACKAGE)-java/usr/share/java/$(LIBRARY_PACKAGE)-$$COMPONENT-$(API_VERSION).jar; \ + ln -s $(LIBRARY_PACKAGE)-$$COMPONENT-$(API_VERSION).jar \ + debian/lib$(LIBRARY_PACKAGE)-java/usr/share/java/$(LIBRARY_PACKAGE)-$$COMPONENT.jar; \ + done _______________________________________________ pkg-java-commits mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/pkg-java-commits
