Author: fourmond Date: 2009-01-17 13:49:32 +0000 (Sat, 17 Jan 2009) New Revision: 7837
Added: trunk/jalview/debian/ trunk/jalview/debian/README.Debian trunk/jalview/debian/changelog trunk/jalview/debian/compat trunk/jalview/debian/control trunk/jalview/debian/copyright trunk/jalview/debian/dirs trunk/jalview/debian/docs trunk/jalview/debian/menu.ex trunk/jalview/debian/new-upstream trunk/jalview/debian/rules trunk/jalview/debian/watch trunk/jalview/debian/wrappers/ trunk/jalview/debian/wrappers/jalview Log: [svn-inject] Applying Debian modifications to trunk Property changes on: trunk/jalview/debian ___________________________________________________________________ Name: mergeWithUpstream + 1 Added: trunk/jalview/debian/README.Debian =================================================================== --- trunk/jalview/debian/README.Debian (rev 0) +++ trunk/jalview/debian/README.Debian 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,6 @@ +jalview for Debian +------------------ + +<possible notes regarding this package - if none, delete this file> + + -- Vincent Fourmond <[email protected]> Thu, 15 Jan 2009 23:12:16 +0100 Added: trunk/jalview/debian/changelog =================================================================== --- trunk/jalview/debian/changelog (rev 0) +++ trunk/jalview/debian/changelog 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,8 @@ +jalview (2.4.dfsg-1) UNRELEASED unstable; urgency=low + + * DO NOT UPLOAD THIS PACKAGE: WORK IN PROGRESS ! + * Initial release (Closes: #507436) + * Adding a debian/new-upstream script to repackage the original + tarball, getting rid of the non-free bits. + + -- Vincent Fourmond <[email protected]> Sat, 17 Jan 2009 14:18:11 +0100 Added: trunk/jalview/debian/compat =================================================================== --- trunk/jalview/debian/compat (rev 0) +++ trunk/jalview/debian/compat 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1 @@ +7 Added: trunk/jalview/debian/control =================================================================== --- trunk/jalview/debian/control (rev 0) +++ trunk/jalview/debian/control 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,21 @@ +Source: jalview +Section: science +Priority: optional +Maintainer: Vincent Fourmond <[email protected]> +Build-Depends: cdbs, debhelper (>= 7), default-jdk-builddep, + ant +Standards-Version: 3.8.0 +Homepage: http://www.jalview.org/ + +Package: jalview +Architecture: any +Depends: ${misc:Depends}, openjdk-6-jre | cacao-oj6-jre | java6-runtime, + java-wrappers (>= 0.1.11), libxerces2-java, libxalan2-java, +Suggests: clustalw, kalign, t-coffee +Description: multiple alignment editor + JalView is a Java alignement editor that can work with sequence + alignement produced by programs implementing alignment algorithms + such as clustalw, kalign and t-coffee. + . + It has lots of features, and can be considered a decent BioEdit + replacement for Debian systems. Added: trunk/jalview/debian/copyright =================================================================== --- trunk/jalview/debian/copyright (rev 0) +++ trunk/jalview/debian/copyright 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,52 @@ +This package was debianized by: + + Vincent Fourmond <[email protected]> on Thu, 15 Jan 2009 23:12:16 +0100 + +It was downloaded from: + + <url://example.com> + +Upstream Author(s): + + <put author's name and email here> + <likewise for another author> + +Copyright: + + <Copyright (C) YYYY Firtname Lastname> + <likewise for another author> + +License: + +### SELECT: ### + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. +### OR ### + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License version 2 as + published by the Free Software Foundation. +########## + + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + +On Debian systems, the complete text of the GNU General +Public License can be found in `/usr/share/common-licenses/GPL'. + +The Debian packaging is: + + Copyright C) 2009, Vincent Fourmond <[email protected]> + +and is licensed under the GPL, see above. + + +# Please also look if there are files or directories which have a +# different copyright/license attached and list them here. Added: trunk/jalview/debian/dirs =================================================================== --- trunk/jalview/debian/dirs (rev 0) +++ trunk/jalview/debian/dirs 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,2 @@ +usr/share/java +usr/bin \ No newline at end of file Added: trunk/jalview/debian/docs =================================================================== --- trunk/jalview/debian/docs (rev 0) +++ trunk/jalview/debian/docs 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1 @@ +README Added: trunk/jalview/debian/menu.ex =================================================================== --- trunk/jalview/debian/menu.ex (rev 0) +++ trunk/jalview/debian/menu.ex 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,2 @@ +?package(jalview):needs="X11|text|vc|wm" section="Applications/see-menu-manual"\ + title="jalview" command="/usr/bin/jalview" Added: trunk/jalview/debian/new-upstream =================================================================== --- trunk/jalview/debian/new-upstream (rev 0) +++ trunk/jalview/debian/new-upstream 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,37 @@ +#!/bin/sh +# +# new-upstream: copyright 2007 by Vincent Fourmond. +# See debian/copyright file for details. +# +# Called by uscan; from uscan(1): +# +# Finally, if a third parameter (an action) is given in the watchfile +# line, this is taken as the name of a command, and the command +# command --upstream-version version filename +# +# is executed, using either the original file or the symlink name. +# +# Thanks to Sam Morris <[email protected]> for giving me the idea +# + +version=$2 +filename=$3 + +dir=`mktemp -d` + +# We repackage the upstream source zip file: +tar cvz -C $dir -f "$filename" +origname=jalview_$version.dfsg.orig.tar.gz + +# We repackage excluding the lib/ subdir +cd $dir +# Removing the utils/ directory, not needed for build ? +rm -rf jalview*/utils +# Remove unneeded jar files. +for jar in xercesImpl.jar ; do + rm -f jalview*/lib/$f +done +tar cvz -f $origname jalv* +cd - +mv $dir/$origname .. +rm -rf $dir \ No newline at end of file Added: trunk/jalview/debian/rules =================================================================== --- trunk/jalview/debian/rules (rev 0) +++ trunk/jalview/debian/rules 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,62 @@ +#!/usr/bin/make -f +# debian/rules for statsvn, based on the one from Batik (uses CDBS) + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +VERSION = $(shell dpkg-parsechangelog | egrep '^Version' | \ + sed -r 's/Version:\s*//' | sed -r 's/^[0-9]+://' | \ + sed -r 's/(\.dfsg)?-[0-9.]+//') + +# export JITC_PROCESSOR_TYPE=6 + +include /usr/share/cdbs/1/rules/debhelper.mk +include /usr/share/cdbs/1/class/ant.mk +include /usr/share/cdbs/1/rules/dpatch.mk + +JAVA_HOME_DIRS := /usr/lib/jvm/java-gcj +ANT_HOME := /usr/share/ant +DEB_ANT_COMPILER := modern +DEB_ANT_BUILD_TARGET := build makedist +DEB_BUILDDIR := . +DEB_ANT_BUILDFILE := build.xml +DEB_ANT_CLEAN_TARGET := clean + +# Some comments here: +# libaxis-java +# -> saaj.jar +# -> jaxrpc.jar +# libwsdl4j-java +# -> wsdl4j.jar +# libgnujaf-java +# -> activation.jar +# javahelp2: +# -> jhall.jar + +# These are jar provided by the source tarball that should be installed +# along with the program to make it work. +# +# AS LONG AS THIS VARIABLE EXISTS, UPLOAD TO MAIN, AND POSSIBLY TO NON-FREE +# IS IMPOSSIBLE ! +BINARY_JARS = activation.jar axis.jar castor-1.1-cycle-xml.jar \ + commons-discovery.jar commons-logging.jar jaxrpc.jar \ + jhall.jar Jmol-11.0.2.jar log4j-1.2.8.jar mail.jar regex.jar \ + saaj.jar vamsas-client.jar wsdl4j.jar xml-apis.jar + + +print-version: + echo $(VERSION) + +install-binary-jars: + for jar in $(BINARY_JARS); do \ + install -m 644 lib/$$jar debian/jalview/usr/share/java/jalview-$$jar; \ + done + +install/jalview:: install-binary-jars + install -m 644 dist/jalview.jar debian/jalview/usr/share/java/jalview-$(VERSION).jar + ln -s jalview-$(VERSION).jar debian/jalview/usr/share/java/jalview.jar + install -m 755 -t debian/jalview/usr/bin debian/wrappers/jalview + +clean:: + rm -rf dist + Property changes on: trunk/jalview/debian/rules ___________________________________________________________________ Name: svn:executable + * Added: trunk/jalview/debian/watch =================================================================== --- trunk/jalview/debian/watch (rev 0) +++ trunk/jalview/debian/watch 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,10 @@ +# Example watch control file for uscan +# Rename this file to "watch" and then you can run the "uscan" command +# to check for upstream updates and more. +# See uscan(1) for format + +# Compulsory line, this is a version 3 file +version=3 + +opts="dversionmangle=s/\.dfsg//,uversionmangle=s/_/./" \ +http://www.jalview.org/source/source.html jalview_(.*)\.tar\.gz debian/new-upstream Added: trunk/jalview/debian/wrappers/jalview =================================================================== --- trunk/jalview/debian/wrappers/jalview (rev 0) +++ trunk/jalview/debian/wrappers/jalview 2009-01-17 13:49:32 UTC (rev 7837) @@ -0,0 +1,16 @@ +#!/bin/sh + +# Include the wrappers utility script +. /usr/lib/java-wrappers/java-wrappers.sh + +# We need openjdk or sun6 +find_java_runtime openjdk sun6 + +find_jars jalview-activation jalview-axis jalview-castor-1.1-cycle-xml \ + jalview-commons-discovery jalview-commons-logging jalview-jaxrpc \ + jalview-jhall jalview-Jmol-11.0.2 jalview-log4j-1.2.8 \ + jalview-mail jalview-regex jalview-saaj jalview-vamsas-client \ + jalview-wsdl4j xercesImpl xml-apis \ + jalview + +run_java jalview.bin.Jalview "$@" _______________________________________________ pkg-java-commits mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/pkg-java-commits
