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ebourg-guest pushed a change to branch master
in repository uimaj.
from 10c3fab New upstream release (2.8.1)
new fc637ef Standards-Version updated to 3.9.8
new 5f1db78 Switch to debhelper level 10
new fd8a9df Use secure Vcs-* URLs
new 81567c2 Build with the DH sequencer instead of CDBS
new 2326e57 Removed the unused build dependency on ant
adds 0aef507 New upstream version 2.9.0
new e06e7ce Merge tag 'upstream/2.9.0'
new 89ac96b Refreshed the patches
new f6ae993 No longer build Java 5 compatible bytecode
new 598a652 Upload to unstable
The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DEPENDENCIES | 36 +-
PearPackagingMavenPlugin/pom.xml | 8 +-
README | 2 +-
RELEASE_NOTES.html | 43 +-
aggregate-uimaj-docbooks/pom.xml | 8 +-
aggregate-uimaj-eclipse-plugins/pom.xml | 8 +-
aggregate-uimaj/pom.xml | 8 +-
debian/changelog | 14 +
debian/clean | 1 +
debian/compat | 2 +-
debian/control | 13 +-
debian/maven.properties | 3 -
debian/patches/build-helper-version.diff | 2 +-
debian/patches/maven-plugin-configuration.diff | 2 +-
debian/rules | 40 +-
issuesFixed/jira-report.html | 158 ++++-
jVinci/pom.xml | 8 +-
.../main/java/org/apache/vinci/debug/Debug.java | 4 +
.../org/apache/vinci/transport/BaseClient.java | 94 ++-
.../org/apache/vinci/transport/BaseServer.java | 11 +
.../apache/vinci/transport/BaseServerRunnable.java | 3 +
.../java/org/apache/vinci/transport/Frame.java | 13 +-
.../org/apache/vinci/transport/FrameComponent.java | 1 +
.../java/org/apache/vinci/transport/FrameLeaf.java | 19 +
.../apache/vinci/transport/FrameTransporter.java | 6 +-
.../org/apache/vinci/transport/KeyValuePair.java | 4 +
.../apache/vinci/transport/PooledVinciClient.java | 27 +
.../vinci/transport/SimpleTransportable.java | 1 +
.../org/apache/vinci/transport/Transportable.java | 5 +-
.../vinci/transport/TransportableFactory.java | 2 +-
.../org/apache/vinci/transport/VinciClient.java | 87 ++-
.../org/apache/vinci/transport/VinciFrame.java | 32 +
.../org/apache/vinci/transport/VinciServer.java | 33 +
.../apache/vinci/transport/XTalkTransporter.java | 9 +-
.../vinci/transport/context/VinciContext.java | 71 ++-
.../apache/vinci/transport/document/AFrame.java | 31 +
.../vinci/transport/document/XMLToVinci.java | 13 +-
.../vinci/transport/document/XMLToXTalk.java | 6 +
.../vinci/transport/document/XTalkToSAX.java | 4 +
.../vinci/transport/util/Base64Converter.java | 28 +-
.../vinci/transport/util/StreamMaterializer.java | 4 +-
.../transport/util/TransportableConverter.java | 2 +-
.../apache/vinci/transport/util/UTFConverter.java | 4 +-
.../apache/vinci/transport/util/XMLConverter.java | 18 +-
.../vinci/transport/vns/client/ResolveResult.java | 15 +-
.../vinci/transport/vns/client/ServeonResult.java | 13 +
.../vinci/transport/vns/client/VNSConfig.java | 4 +
jcasgen-maven-plugin/pom.xml | 2 +-
.../uima/tools/jcasgen/maven/JCasGenMojo.java | 10 +-
.../uima/tools/jcasgen/maven/JCasGenMojoTest.java | 11 +
.../resources/{simple => invalidFeature}/pom.xml | 0
.../type/TypeSystem.xml} | 8 +-
pom.xml | 10 +-
uima-docbook-overview-and-setup/pom.xml | 8 +-
uima-docbook-references/pom.xml | 8 +-
uima-docbook-references/src/docbook/ref.cas.xml | 30 +-
.../src/docbook/ref.compress.xml | 18 +-
.../src/docbook/ref.xml.component_descriptor.xml | 82 ++-
uima-docbook-tools/pom.xml | 8 +-
uima-docbook-tutorials-and-users-guides/pom.xml | 8 +-
.../docbook/annotator_analysis_engine_guide.xml | 8 +-
.../src/docbook/tug.application.xml | 219 ++++++-
uimaj-adapter-soap/pom.xml | 8 +-
uimaj-adapter-vinci/pom.xml | 8 +-
uimaj-bootstrap/pom.xml | 8 +-
uimaj-component-test-util/pom.xml | 8 +-
uimaj-core/pom.xml | 23 +-
.../apache/uima/InternationalizedException.java | 51 +-
.../org/apache/uima/ResourceSpecifierFactory.java | 8 +
.../src/main/java/org/apache/uima/UimaContext.java | 38 ++
.../java/org/apache/uima/UimaContextHolder.java | 62 ++
.../asb/impl/FlowControllerContainer.java | 46 +-
.../impl/PrimitiveAnalysisEngine_impl.java | 31 +-
.../src/main/java/org/apache/uima/cas/CAS.java | 2 +-
.../java/org/apache/uima/cas/CASException.java | 3 +-
.../org/apache/uima/cas/CASRuntimeException.java | 17 +-
.../java/org/apache/uima/cas/SerialFormat.java | 92 ++-
.../apache/uima/cas/impl/AnnotationIndexImpl.java | 2 +-
.../org/apache/uima/cas/impl/BinaryCasSerDes4.java | 74 ++-
.../org/apache/uima/cas/impl/BinaryCasSerDes6.java | 201 ++++--
.../java/org/apache/uima/cas/impl/CASImpl.java | 485 ++++++++++----
.../java/org/apache/uima/cas/impl/CASMetadata.java | 6 +
.../org/apache/uima/cas/impl/CASMgrSerializer.java | 8 +-
.../org/apache/uima/cas/impl/CASSerializer.java | 76 ++-
.../apache/uima/cas/impl/CasSerializerSupport.java | 8 +-
.../org/apache/uima/cas/impl/CommonSerDes.java | 253 ++++++++
.../java/org/apache/uima/cas/impl/FSIndexFlat.java | 2 +-
.../uima/cas/impl/FSIndexRepositoryImpl.java | 5 +
.../org/apache/uima/cas/impl/FSsTobeAddedback.java | 2 +-
.../org/apache/uima/cas/impl/Serialization.java | 38 +-
.../java/org/apache/uima/cas/impl/Subiterator.java | 39 +-
.../org/apache/uima/cas/impl/TypeSystem2Xml.java | 3 +-
.../org/apache/uima/cas/impl/TypeSystemImpl.java | 51 +-
.../org/apache/uima/cas/impl/XCASDeserializer.java | 11 +-
.../apache/uima/cas/impl/XmiCasDeserializer.java | 101 ++-
.../org/apache/uima/cas/text/AnnotationIndex.java | 109 +++-
.../uima/flow/impl/FlowControllerContext_impl.java | 3 +-
.../uima/impl/ResourceSpecifierFactory_impl.java | 8 +
.../org/apache/uima/impl/UimaContext_ImplBase.java | 54 +-
.../org/apache/uima/internal/util/I18nUtil.java | 19 +-
.../apache/uima/internal/util/Int2IntHashMap.java | 2 +-
.../org/apache/uima/internal/util/MiscImpl.java | 101 +++
.../internal/util/MsgLocalizationClassLoader.java | 27 +-
.../org/apache/uima/jcas/impl/JCasHashMap.java | 2 +-
.../java/org/apache/uima/jcas/impl/JCasImpl.java | 103 ++-
.../resource/ResourceConfigurationException.java | 10 +
.../org/apache/uima/resource/ResourceManager.java | 3 +
.../apache/uima/resource/Resource_ImplBase.java | 2 +-
.../apache/uima/resource/impl/CasManager_impl.java | 3 +-
.../resource/impl/ConfigurationManager_impl.java | 150 ++---
.../uima/resource/impl/ResourceManager_impl.java | 10 +
.../metadata/impl/FsIndexCollection_impl.java | 12 +-
.../uima/resource/metadata/impl/Import_impl.java | 9 +-
.../metadata/impl/TypePriorities_impl.java | 12 +-
.../metadata/impl/TypeSystemDescription_impl.java | 13 +-
.../main/java/org/apache/uima/util/CasCopier.java | 9 +-
.../main/java/org/apache/uima/util/CasIOUtils.java | 540 ++++++++++++++++
.../java/org/apache/uima/util/CasLoadMode.java | 98 +++
.../src/main/java/org/apache/uima/util/Misc.java | 1 +
.../main/java/org/apache/uima/util/Settings.java | 23 +-
.../org/apache/uima/util/XmlCasDeserializer.java | 34 +-
.../org/apache/uima/util/XmlCasSerializer.java | 6 +-
.../org/apache/uima/util/impl/Settings_impl.java | 121 +++-
.../org/apache/uima/util/impl/XMLParser_impl.java | 4 +
.../apache/uima/UIMAException_Messages.properties | 17 +-
.../apache/uima/cas/admin/admin_errors.properties | 2 +-
.../org/apache/uima/cas/impl/annot_impl.properties | 2 +-
.../uima/cas/impl/ll_runtimeException.properties | 4 +-
.../org/apache/uima/impl/factoryConfig.xml | 6 +-
.../org/apache/uima/impl/log_messages.properties | 4 +
.../org/apache/uima/pear/pear_messages.properties | 4 +-
uimaj-core/src/test/java/aa/Root.java | 700 +++++++++++----------
uimaj-core/src/test/java/aa/Root_Type.java | 655 ++++++++++++-------
.../impl/AnalysisEngine_implTest.java | 76 ++-
.../MultiprocessingAnalysisEngine_implTest.java | 19 +-
.../uima/analysis_engine/impl/TestAnnotator2.java | 78 ++-
.../apache/uima/cas/impl/XCASDeserializerTest.java | 6 +-
.../uima/cas/impl/XmiCasDeserializerTest.java | 18 +-
.../uima/cas/test/AnnotationIteratorTest.java | 13 +-
.../uima/cas/test/CompleteSerializationTest.java | 2 +-
.../apache/uima/cas/test/FeatureStructureTest.java | 13 +
.../apache/uima/cas/test/GrowingTheCasTest.java | 30 +-
.../apache/uima/cas/test/IndexRepositoryTest.java | 98 ++-
.../uima/cas/test/SerializationReinitTest.java | 333 ++++++----
.../uima/internal/util/Int2IntHashMapTest.java | 16 +
.../org/apache/uima/jcas/test/CASTestSetup.java | 8 +
.../java/org/apache/uima/jcas/test/JCasTest.java | 18 +
.../java/org/apache/uima/jcas/test/generatedx.xml | 152 ++---
.../java/org/apache/uima/util/CasCopierTest.java | 17 +-
.../java/org/apache/uima/util/CasIOUtilsTest.java | 269 ++++++++
.../apache/uima/util/UimaContextHolderTest.java | 68 ++
...TypeSystem.xml => testTypeSystem_variation.xml} | 6 +-
...verrides.xml => AggregateForMultipleAeTest.xml} | 8 +-
.../AnnotatorWithExternalOverrides.xml | 1 +
...ntainingCppAnnotator.xml => MultipleAeTest.xml} | 45 +-
...tainingCppAnnotator.xml => MultipleAeTest2.xml} | 35 +-
...tainingCppAnnotator.xml => MultipleAeTest3.xml} | 45 +-
.../TextAnalysisEngineImplTest/MultipleAeTest4.xml | 97 +++
.../testExternalOverride.settings | 1 +
.../testExternalOverride2.settings | 1 +
.../impl/ImportsTypeSystemImportedByName.xml} | 65 +-
...tedByName.xml => TypeSystemImportedByName2.xml} | 120 ++--
uimaj-cpe/checkpoint.dat | Bin 1361 -> 1361 bytes
uimaj-cpe/{checkpoint.dat => checkpoint.dat.prev} | Bin 1361 -> 1368 bytes
uimaj-cpe/pom.xml | 8 +-
.../collection/impl/cpm/container/CPEFactory.java | 13 +-
.../CasObjectNetworkCasProcessorImpl.java | 10 +-
.../CasProcessorConfigurationJAXBImpl.java | 11 +-
.../cpm/container/NetworkCasProcessorImpl.java | 2 +-
.../cpm/container/ProcessingContainer_Impl.java | 7 +-
.../deployer/socket/ProcessControllerAdapter.java | 6 +-
.../container/deployer/socket/SocketTransport.java | 13 +-
.../deployer/vinci/VinciCasProcessorDeployer.java | 28 +-
.../collection/impl/cpm/engine/ProcessingUnit.java | 2 +
uimaj-document-annotation/pom.xml | 8 +-
uimaj-eclipse-feature-runtime/feature.xml | 4 +-
uimaj-eclipse-feature-runtime/pom.xml | 8 +-
uimaj-eclipse-feature-tools/feature.xml | 19 +-
uimaj-eclipse-feature-tools/pom.xml | 8 +-
.../src/main/resources/feature.xml | 1 -
uimaj-eclipse-update-site/pom.xml | 2 +-
uimaj-ep-cas-editor-ide/META-INF/MANIFEST.MF | 57 +-
uimaj-ep-cas-editor-ide/pom.xml | 8 +-
.../caseditor/ide/DefaultCasDocumentProvider.java | 36 +-
.../wizards/DocumentImportStructureProvider.java | 136 ++--
.../ide/wizards/ImportDocumentWizardPage.java | 17 +-
uimaj-ep-cas-editor/META-INF/MANIFEST.MF | 116 ++--
uimaj-ep-cas-editor/plugin.xml | 2 +-
uimaj-ep-cas-editor/pom.xml | 16 +-
.../uima/caseditor/editor/DocumentFormat.java | 28 -
.../uima/caseditor/editor/DocumentUimaImpl.java | 209 +++---
uimaj-ep-configurator/META-INF/MANIFEST.MF | 53 +-
uimaj-ep-configurator/pom.xml | 24 +-
.../taeconfigurator/TAEConfiguratorPlugin.java | 62 +-
.../taeconfigurator/editors/MultiPageEditor.java | 8 +-
.../editors/ui/AbstractSectionParm.java | 10 +-
.../taeconfigurator/editors/ui/HeaderPage.java | 4 +-
.../editors/ui/HeaderPageWithSash.java | 9 +-
.../editors/ui/dialogs/AbstractDialog.java | 4 +-
.../uima/taeconfigurator/model/AllTypes.java | 1 -
.../wizards/AbstractNewWizardPage.java | 2 +-
uimaj-ep-debug/META-INF/MANIFEST.MF | 10 +-
uimaj-ep-debug/pom.xml | 14 +-
uimaj-ep-jcasgen/META-INF/MANIFEST.MF | 19 +-
uimaj-ep-jcasgen/pom.xml | 22 +-
.../uima/jcas/jcasgenp/EP_LogThrowErrorImpl.java | 2 +-
.../org/apache/uima/jcas/jcasgenp/JgPlugin.java | 5 +-
uimaj-ep-launcher/META-INF/MANIFEST.MF | 17 +-
uimaj-ep-launcher/pom.xml | 9 +-
uimaj-ep-pear-packager/META-INF/MANIFEST.MF | 16 +-
uimaj-ep-pear-packager/pom.xml | 8 +-
.../apache/uima/pear/generate/messages.properties | 2 +-
uimaj-ep-runtime/META-INF/MANIFEST.MF | 140 ++---
uimaj-ep-runtime/pom.xml | 8 +-
uimaj-examples/pom.xml | 8 +-
.../uima/examples/SourceDocumentInformation.java | 466 +++++++-------
.../examples/SourceDocumentInformation_Type.java | 402 ++++++------
.../apache/uima/examples/cas/RegExAnnotator.java | 2 +-
.../cpe/PersonTitleDBWriterCasConsumer.java | 2 +-
.../ExampleCasMultiplierMessages.properties | 2 +-
.../UIMA Annotation Viewer.launch | 50 +-
.../UIMA CAS Visual Debugger.launch | 36 +-
.../src/main/run_configuration/UIMA CPE GUI.launch | 50 +-
.../UIMA Document Analyzer.launch | 40 +-
.../run_configuration/UIMA JCasGen Merge.launch | 52 +-
.../src/main/run_configuration/UIMA JCasGen.launch | 36 +-
.../run_configuration/UIMA PEAR Installer.launch | 40 +-
.../src/main/run_configuration/UIMA Run AE.launch | 42 +-
.../src/main/run_configuration/UIMA Run CPE.launch | 42 +-
.../main/run_configuration/UIMA Start VNS.launch | 34 +-
.../UIMA Start Vinci Service.launch | 42 +-
.../src/org/apache/uima/util/jet/JetExpander.java | 2 +-
uimaj-json/pom.xml | 8 +-
.../org/apache/uima/json/JsonCasSerializer.java | 1 +
.../apache/uima/json/JsonCasSerializerTest.java | 2 +
.../apache/uima/json/JsonXmiCasSerializerTest.java | 1 +
.../CasSerialization/desc/nameSpaceNeeded.xml | 7 +-
.../expected/json/nameSpaceCollision.txt | 2 +-
.../expected/json/nameSpaceCollision2.txt | 2 +-
.../expected/json/nameSpaceCollision2Omits.txt | 2 +-
.../expected/json/nameSpaceCollision2pp.txt | 13 +-
.../expected/json/nameSpaceCollision2ppOmits.txt | 13 +-
.../expected/json/nameSpaceCollisionOmits.txt | 2 +-
.../expected/json/nameSpaceCollsionFiltered.txt | 2 +-
.../expected/xmi/nameSpaceCollision.xml | 2 +-
.../expected/xmi/nameSpaceCollision2.xml | 2 +-
.../expected/xmi/nameSpaceCollision2Omits.xml | 2 +-
.../expected/xmi/nameSpaceCollision2pp.xml | 8 +-
.../expected/xmi/nameSpaceCollision2ppOmits.xml | 8 +-
.../expected/xmi/nameSpaceCollisionOmits.xml | 2 +-
.../expected/xmi/nameSpaceCollsionFiltered.xml | 2 +-
uimaj-parent/pom.xml | 191 +++++-
uimaj-test-util/pom.xml | 8 +-
uimaj-tools/pom.xml | 8 +-
.../org/apache/uima/tools/ValidateDescriptor.java | 2 -
.../uima/tools/jcasgen/JCas_TypeTemplate.java | 18 +-
.../uima/tools/viewer/CasAnnotationViewer.java | 12 +-
.../javajet/jcasgen/templates/JCas_Type.javajet | 24 -
258 files changed, 7458 insertions(+), 3118 deletions(-)
create mode 100644 debian/clean
copy jcasgen-maven-plugin/src/test/resources/{simple =>
invalidFeature}/pom.xml (100%)
copy
jcasgen-maven-plugin/src/test/resources/{classpath/src/main/resources/type/Token.xml
=> invalidFeature/type/TypeSystem.xml} (87%)
create mode 100644
uimaj-core/src/main/java/org/apache/uima/UimaContextHolder.java
create mode 100644
uimaj-core/src/main/java/org/apache/uima/cas/impl/CommonSerDes.java
create mode 100644
uimaj-core/src/main/java/org/apache/uima/internal/util/MiscImpl.java
create mode 100644
uimaj-core/src/main/java/org/apache/uima/util/CasIOUtils.java
create mode 100644
uimaj-core/src/main/java/org/apache/uima/util/CasLoadMode.java
create mode 100644
uimaj-core/src/test/java/org/apache/uima/util/CasIOUtilsTest.java
create mode 100644
uimaj-core/src/test/java/org/apache/uima/util/UimaContextHolderTest.java
copy uimaj-core/src/test/resources/ExampleCas/{testTypeSystem.xml =>
testTypeSystem_variation.xml} (96%)
copy
uimaj-core/src/test/resources/TextAnalysisEngineImplTest/{AggregateWithExternalOverrides.xml
=> AggregateForMultipleAeTest.xml} (88%)
copy
uimaj-core/src/test/resources/TextAnalysisEngineImplTest/{TestAggregateContainingCppAnnotator.xml
=> MultipleAeTest.xml} (60%)
copy
uimaj-core/src/test/resources/TextAnalysisEngineImplTest/{TestAggregateContainingCppAnnotator.xml
=> MultipleAeTest2.xml} (67%)
copy
uimaj-core/src/test/resources/TextAnalysisEngineImplTest/{TestAggregateContainingCppAnnotator.xml
=> MultipleAeTest3.xml} (60%)
create mode 100644
uimaj-core/src/test/resources/TextAnalysisEngineImplTest/MultipleAeTest4.xml
copy
uimaj-core/src/test/resources/{CasCreationUtilsTest/SupertypeMergeTest1.xml =>
org/apache/uima/resource/metadata/impl/ImportsTypeSystemImportedByName.xml}
(75%)
copy
uimaj-core/src/test/resources/org/apache/uima/resource/metadata/impl/{TypeSystemImportedByName.xml
=> TypeSystemImportedByName2.xml} (96%)
copy uimaj-cpe/{checkpoint.dat => checkpoint.dat.prev} (66%)
delete mode 100644
uimaj-ep-cas-editor/src/main/java/org/apache/uima/caseditor/editor/DocumentFormat.java
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