Pierre Gruet pushed to branch experimental at Debian Java Maintainers / jalview
Commits: 7b9e8f11 by Pierre Gruet at 2024-10-05T23:47:35+02:00 Waiting a bit for the launcher to start - - - - - df497ffd by Pierre Gruet at 2024-10-05T23:48:40+02:00 Launcher autopkgtest with xvfb-run to avoid errors due to headless environment - - - - - 6f87a62c by Pierre Gruet at 2024-10-05T23:49:19+02:00 Upload to experimental - - - - - 5 changed files: - debian/changelog - debian/patches/series - + debian/patches/waiting_launcher.patch - debian/tests/control - debian/tests/someCommandLineInvocations Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +jalview (2.11.4.0+dfsg-3~exp1) experimental; urgency=medium + + * Waiting a bit for the launcher to start + * Launching autopkgtest with xvfb-run to avoid errors due to headless + environment + + -- Pierre Gruet <[email protected]> Sat, 05 Oct 2024 23:48:52 +0200 + jalview (2.11.4.0+dfsg-3~exp0) experimental; urgency=medium * Putting example files in the working directory of the autopkgtest ===================================== debian/patches/series ===================================== @@ -13,3 +13,4 @@ timestamp_from_changelog.patch groovy_syntax.patch deactivate_flatlaf.patch unneeded_checks_when_launching.patch +waiting_launcher.patch ===================================== debian/patches/waiting_launcher.patch ===================================== @@ -0,0 +1,17 @@ +Description: wiaint a bit for the launcher to start instead of failing at + startup +Author: Pierre Gruet <[email protected]> +Forwarded: no +Last-Update: 2024-10-05 + +--- a/src/jalview/bin/Launcher.java ++++ b/src/jalview/bin/Launcher.java +@@ -93,7 +93,7 @@ + // must set --debug before --launcher... + boolean launcherstop = false; + boolean launcherprint = false; +- boolean launcherwait = false; ++ boolean launcherwait = true; + ArrayList<String> arguments = new ArrayList<>(); + String previousArg = null; + // set debug first ===================================== debian/tests/control ===================================== @@ -1,5 +1,5 @@ Tests: someCommandLineInvocations -Depends: @ +Depends: @, xauth, xvfb Restrictions: allow-stderr Tests: run-unit-test ===================================== debian/tests/someCommandLineInvocations ===================================== @@ -12,12 +12,12 @@ TEMP_HOME=$(mktemp -d) trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM cp -r examples $WORKDIR cd $WORKDIR -HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -blc uniref50_out.blc -HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -fasta uniref50_out.mfa -HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pfam uniref50_out.pfam -HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pir uniref50_out.pir -HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -clustal uniref50_out1.aln -HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pileup uniref50_out2.aln +HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -blc uniref50_out.blc +HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -fasta uniref50_out.mfa +HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pfam uniref50_out.pfam +HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pir uniref50_out.pir +HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -clustal uniref50_out1.aln +HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pileup uniref50_out2.aln diff uniref50_out.blc $SOURCEDIR/debian/tests/expectedOutputs/test_uniref50_out.blc View it on GitLab: https://salsa.debian.org/java-team/jalview/-/compare/2e74e9c10442a3069cceaab5d4419ff6b76ce3ca...6f87a62c29eedf6d05d2fe79df9fd8fe09d3250d -- View it on GitLab: https://salsa.debian.org/java-team/jalview/-/compare/2e74e9c10442a3069cceaab5d4419ff6b76ce3ca...6f87a62c29eedf6d05d2fe79df9fd8fe09d3250d You're receiving this email because of your account on salsa.debian.org.
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