Your message dated Sun, 08 Oct 2023 21:52:03 +0000
with message-id <[email protected]>
and subject line Bug#1045599: fixed in jalview 2.11.2.7+dfsg-1
has caused the Debian Bug report #1045599,
regarding jalview: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1045599: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1045599
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: jalview
Version: 2.11.2.6+dfsg-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> -----------------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package jalview
> dpkg-buildpackage: info: source version 2.11.2.6+dfsg-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Pierre Gruet <[email protected]>
> dpkg-source --before-build .
> debian/rules clean
> dh clean --with javahelper --with maven_repo_helper
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # Removing our handmade pom.
> rm -f pom.xml
> # Removing the jars we gathered for the build and the tests.
> rm -f -rf cpJars
> dh_auto_clean
> sh -c "find . -wholename .*build/tmp | xargs echo | sed -e
> 's^build/tmp^build^g' | xargs rm -Rf"
> sh -c "find . -wholename .*build/debian | xargs echo | sed -e
> 's^build/tmp^build^g' | xargs rm -Rf"
> rm -Rf /<<BUILDDIR>>/jalview-2.11.2.6\+dfsg/.gradle
> /<<BUILDDIR>>/jalview-2.11.2.6\+dfsg/buildSrc/.gradle .m2
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> jh_clean
> dh_clean
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building jalview using existing
> ./jalview_2.11.2.6+dfsg.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: ignoring deletion of directory build
> dpkg-source: error: cannot represent change to
> classes/com/github/reinert/jjschema/Attributes.class: binary file contents
> changed
> dpkg-source: error: add classes/com/github/reinert/jjschema/Attributes.class
> in debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/AmpersandRule.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/AmpersandRule.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/Any.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/Any.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/BackG.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/BackG.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/BackMatch.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/BackMatch.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/BackRefRule.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/BackRefRule.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/Backup.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/Backup.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/BadRangeArgs.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/BadRangeArgs.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/BasicStringBufferLike.class: binary file contents
> changed
> dpkg-source: error: add classes/com/stevesoft/pat/BasicStringBufferLike.class
> in debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/Bits.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/Bits.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/Boundary.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/Boundary.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/Bracket.class: binary file contents changed
> dpkg-source: error: add classes/com/stevesoft/pat/Bracket.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> classes/com/stevesoft/pat/Branch.class: binary file contents changed
[...]
> dpkg-source: error: add tests/junit/extensions/PrivilegedAccessor.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to tests/mc_view/AtomTest.class:
> binary file contents changed
> dpkg-source: error: add tests/mc_view/AtomTest.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to tests/mc_view/BondTest.class:
> binary file contents changed
> dpkg-source: error: add tests/mc_view/BondTest.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> tests/mc_view/PDBChainTest.class: binary file contents changed
> dpkg-source: error: add tests/mc_view/PDBChainTest.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> tests/mc_view/PDBfileTest.class: binary file contents changed
> dpkg-source: error: add tests/mc_view/PDBfileTest.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: cannot represent change to
> tests/mc_view/ResidueTest.class: binary file contents changed
> dpkg-source: error: add tests/mc_view/ResidueTest.class in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/jalview_2.11.2.6+dfsg-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: jalview
Source-Version: 2.11.2.7+dfsg-1
Done: Pierre Gruet <[email protected]>
We believe that the bug you reported is fixed in the latest version of
jalview, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <[email protected]> (supplier of updated jalview package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 08 Oct 2023 23:17:17 +0200
Source: jalview
Architecture: source
Version: 2.11.2.7+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers
<[email protected]>
Changed-By: Pierre Gruet <[email protected]>
Closes: 1045599
Changes:
jalview (2.11.2.7+dfsg-1) unstable; urgency=medium
.
* New upstream version 2.11.2.7+dfsg
* Refreshing patches
* Excluding the jar files now bundled in dist/
* Fixing the clean target (Closes: #1045599)
* Enhancing build reproducibility by using the timestamp of d/changelog
instead of the build time one in build.gradle
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