Your message dated Wed, 22 Jan 2025 08:43:42 +0000
with message-id <[email protected]>
and subject line Bug#1093582: fixed in automaton 1.12-4+dfsg-2
has caused the Debian Bug report #1093582,
regarding oscar4: FTBFS: Could not resolve dependencies for project
uk.ac.cam.ch.wwmm.oscar:oscar4-recogniser-core:jar:5.2.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1093582: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1093582
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:oscar4
Version: 5.2.0+dfsg-2
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean
dh_auto_clean
bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo
\$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done"
mh_unpatchpoms -pliboscar4-java
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp /usr/share/EMBOSS/data/OBO/chebi.obo
oscar4-obo/src/main/resources/uk/ac/cam/ch/wwmm/oscar/obo/terms/chebi.obo
ln -s oscar4-tokeniser oscar4-tokenizer
dh_auto_configure
mh_patchpoms -pliboscar4-java --debian-build --keep-pom-version
--maven-repo=/<<BUILDDIR>>/oscar4-5.2.0\+dfsg/debian/maven-repo
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build
/usr/lib/jvm/default-java/bin/java -noverify -cp
/usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven
-Dmaven.multiModuleProjectDirectory=/<<BUILDDIR>>/oscar4-5.2.0\+dfsg
-Dclassworlds.conf=/etc/maven/m2-debian.conf
org.codehaus.plexus.classworlds.launcher.Launcher
-s/etc/maven/settings-debian.xml
-Ddebian.dir=/<<BUILDDIR>>/oscar4-5.2.0\+dfsg/debian
-Dmaven.repo.local=/<<BUILDDIR>>/oscar4-5.2.0\+dfsg/debian/maven-repo
--batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US
OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were
deprecated in JDK 13 and will likely be removed in a future release.
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] oscar4-parent [pom]
[INFO] oscar4-core [jar]
[INFO] Chemical Name Dictionaries [jar]
[INFO] oscar4-obo [jar]
[INFO] oscar4-tokenizer [jar]
[INFO] oscar4-recogniser-core [jar]
[INFO] oscar4-memmrecogniser [jar]
[INFO] oscar4-patternrecogniser [jar]
[INFO] oscar4-opsin [jar]
[INFO] oscar4-api [jar]
[INFO] oscar4-preprocessor [jar]
[INFO] oscar4-formatter [jar]
[INFO] oscar4-data [jar]
[INFO]
[INFO] -------------------< uk.ac.cam.ch.wwmm.oscar:oscar4 >-------------------
[INFO] Building oscar4-parent 5.2.0 [1/13]
[INFO] from pom.xml
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] --- enforcer:3.5.0:enforce (enforce-maven) @ oscar4 ---
[INFO] Rule 0: org.apache.maven.enforcer.rules.version.RequireMavenVersion
passed
[INFO]
[INFO] ----------------< uk.ac.cam.ch.wwmm.oscar:oscar4-core >-----------------
[INFO] Building oscar4-core 5.2.0 [2/13]
[INFO] from oscar4-core/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.apache.maven.plugins:maven-jar-plugin:jar:3.1.2 has
been relocated to org.apache.maven.plugins:maven-jar-plugin:jar:3.3.0
[INFO]
[INFO] --- enforcer:3.5.0:enforce (enforce-maven) @ oscar4-core ---
[INFO]
[INFO] --- resources:3.3.1:resources (default-resources) @ oscar4-core ---
[INFO] Copying 11 resources from src/main/resources to target/classes
[INFO]
[INFO] --- compiler:3.13.0:compile (default-compile) @ oscar4-core ---
[INFO] Recompiling the module because of changed source code.
[INFO] Compiling 29 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] Annotation processing is enabled because one or more processors were
found
on the class path. A future release of javac may disable annotation processing
unless at least one processor is specified by name (-processor), or a search
path is specified (--processor-path, --processor-module-path), or annotation
processing is enabled explicitly (-proc:only, -proc:full).
Use -Xlint:-options to suppress this message.
Use -proc:none to disable annotation processing.
[WARNING]
/<<PKGBUILDDIR>>/oscar4-core/src/main/java/uk/ac/cam/ch/wwmm/oscar/document/NamedEntity.java:[286,16]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/oscar4-core/src/main/java/uk/ac/cam/ch/wwmm/oscar/document/NamedEntity.java:[296,16]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/oscar4-core/src/main/java/uk/ac/cam/ch/wwmm/oscar/document/NamedEntity.java:[307,16]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[WARNING]
/<<PKGBUILDDIR>>/oscar4-core/src/main/java/uk/ac/cam/ch/wwmm/oscar/document/NamedEntity.java:[317,16]
Integer(int) in java.lang.Integer has been deprecated and marked for removal
[INFO]
[INFO] --- resources:3.3.1:testResources (default-testResources) @ oscar4-core
---
[INFO] Copying 6 resources from src/test/resources to target/test-classes
[INFO]
[INFO] --- compiler:3.13.0:testCompile (default-testCompile) @ oscar4-core ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 14 source files with javac [debug target 1.8] to
target/test-classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] Annotation processing is enabled because one or more processors were
found
on the class path. A future release of javac may disable annotation processing
unless at least one processor is specified by name (-processor), or a search
path is specified (--processor-path, --processor-module-path), or annotation
processing is enabled explicitly (-proc:only, -proc:full).
Use -Xlint:-options to suppress this message.
Use -proc:none to disable annotation processing.
[INFO]
[INFO] --- surefire:2.22.3:test (default-test) @ oscar4-core ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- jar:3.3.0:jar (default-jar) @ oscar4-core ---
[INFO] Building jar: /<<PKGBUILDDIR>>/oscar4-core/target/oscar4-core-5.2.0.jar
[INFO]
[INFO] ------------< uk.ac.cam.ch.wwmm.oscar:oscar4-chemnamedict >-------------
[INFO] Building Chemical Name Dictionaries 5.2.0 [3/13]
[INFO] from oscar4-chemnamedict/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- enforcer:3.5.0:enforce (enforce-maven) @ oscar4-chemnamedict ---
[INFO]
[INFO] --- resources:3.3.1:resources (default-resources) @ oscar4-chemnamedict
---
[INFO] Copying 3 resources from src/main/resources to target/classes
[INFO]
[INFO] --- compiler:3.13.0:compile (default-compile) @ oscar4-chemnamedict ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 26 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] Annotation processing is enabled because one or more processors were
found
on the class path. A future release of javac may disable annotation processing
unless at least one processor is specified by name (-processor), or a search
path is specified (--processor-path, --processor-module-path), or annotation
processing is enabled explicitly (-proc:only, -proc:full).
Use -Xlint:-options to suppress this message.
Use -proc:none to disable annotation processing.
[INFO]
/<<PKGBUILDDIR>>/oscar4-chemnamedict/src/main/java/uk/ac/cam/ch/wwmm/oscar/chemnamedict/core/ChemNameDictRegistry.java:
Some input files use or override a deprecated API.
[INFO]
/<<PKGBUILDDIR>>/oscar4-chemnamedict/src/main/java/uk/ac/cam/ch/wwmm/oscar/chemnamedict/core/ChemNameDictRegistry.java:
Recompile with -Xlint:deprecation for details.
[INFO]
[INFO] --- resources:3.3.1:testResources (default-testResources) @
oscar4-chemnamedict ---
[INFO] Copying 1 resource from src/test/resources to target/test-classes
[INFO]
[INFO] --- compiler:3.13.0:testCompile (default-testCompile) @
oscar4-chemnamedict ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 10 source files with javac [debug target 1.8] to
target/test-classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] Annotation processing is enabled because one or more processors were
found
on the class path. A future release of javac may disable annotation processing
unless at least one processor is specified by name (-processor), or a search
path is specified (--processor-path, --processor-module-path), or annotation
processing is enabled explicitly (-proc:only, -proc:full).
Use -Xlint:-options to suppress this message.
Use -proc:none to disable annotation processing.
[INFO]
[INFO] --- surefire:2.22.3:test (default-test) @ oscar4-chemnamedict ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- jar:3.3.0:jar (default-jar) @ oscar4-chemnamedict ---
[INFO] Building jar:
/<<PKGBUILDDIR>>/oscar4-chemnamedict/target/oscar4-chemnamedict-5.2.0.jar
[INFO]
[INFO] -----------------< uk.ac.cam.ch.wwmm.oscar:oscar4-obo >-----------------
[INFO] Building oscar4-obo 5.2.0 [4/13]
[INFO] from oscar4-obo/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- enforcer:3.5.0:enforce (enforce-maven) @ oscar4-obo ---
[INFO]
[INFO] --- resources:3.3.1:resources (default-resources) @ oscar4-obo ---
[INFO] Copying 6 resources from src/main/resources to target/classes
[INFO]
[INFO] --- compiler:3.13.0:compile (default-compile) @ oscar4-obo ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 7 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] Annotation processing is enabled because one or more processors were
found
on the class path. A future release of javac may disable annotation processing
unless at least one processor is specified by name (-processor), or a search
path is specified (--processor-path, --processor-module-path), or annotation
processing is enabled explicitly (-proc:only, -proc:full).
Use -Xlint:-options to suppress this message.
Use -proc:none to disable annotation processing.
[INFO]
[INFO] --- resources:3.3.1:testResources (default-testResources) @ oscar4-obo
---
[INFO] Copying 4 resources from src/test/resources to target/test-classes
[INFO]
[INFO] --- compiler:3.13.0:testCompile (default-testCompile) @ oscar4-obo ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 4 source files with javac [debug target 1.8] to
target/test-classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] Annotation processing is enabled because one or more processors were
found
on the class path. A future release of javac may disable annotation processing
unless at least one processor is specified by name (-processor), or a search
path is specified (--processor-path, --processor-module-path), or annotation
processing is enabled explicitly (-proc:only, -proc:full).
Use -Xlint:-options to suppress this message.
Use -proc:none to disable annotation processing.
[INFO]
[INFO] --- surefire:2.22.3:test (default-test) @ oscar4-obo ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- jar:3.3.0:jar (default-jar) @ oscar4-obo ---
[INFO] Building jar: /<<PKGBUILDDIR>>/oscar4-obo/target/oscar4-obo-5.2.0.jar
[INFO]
[INFO] --------------< uk.ac.cam.ch.wwmm.oscar:oscar4-tokenizer >--------------
[INFO] Building oscar4-tokenizer 5.2.0 [5/13]
[INFO] from oscar4-tokeniser/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- enforcer:3.5.0:enforce (enforce-maven) @ oscar4-tokenizer ---
[INFO]
[INFO] --- resources:3.3.1:resources (default-resources) @ oscar4-tokenizer ---
[INFO] Copying 2 resources from src/main/resources to target/classes
[INFO]
[INFO] --- compiler:3.13.0:compile (default-compile) @ oscar4-tokenizer ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 5 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] Annotation processing is enabled because one or more processors were
found
on the class path. A future release of javac may disable annotation processing
unless at least one processor is specified by name (-processor), or a search
path is specified (--processor-path, --processor-module-path), or annotation
processing is enabled explicitly (-proc:only, -proc:full).
Use -Xlint:-options to suppress this message.
Use -proc:none to disable annotation processing.
[INFO]
/<<PKGBUILDDIR>>/oscar4-tokeniser/src/main/java/uk/ac/cam/ch/wwmm/oscartokeniser/TokenSequenceSource.java:
/<<PKGBUILDDIR>>/oscar4-tokeniser/src/main/java/uk/ac/cam/ch/wwmm/oscartokeniser/TokenSequenceSource.java
uses or overrides a deprecated API.
[INFO]
/<<PKGBUILDDIR>>/oscar4-tokeniser/src/main/java/uk/ac/cam/ch/wwmm/oscartokeniser/TokenSequenceSource.java:
Recompile with -Xlint:deprecation for details.
[INFO]
[INFO] --- resources:3.3.1:testResources (default-testResources) @
oscar4-tokenizer ---
[INFO] Copying 1 resource from src/test/resources to target/test-classes
[INFO]
[INFO] --- compiler:3.13.0:testCompile (default-testCompile) @ oscar4-tokenizer
---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 5 source files with javac [debug target 1.8] to
target/test-classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] Annotation processing is enabled because one or more processors were
found
on the class path. A future release of javac may disable annotation processing
unless at least one processor is specified by name (-processor), or a search
path is specified (--processor-path, --processor-module-path), or annotation
processing is enabled explicitly (-proc:only, -proc:full).
Use -Xlint:-options to suppress this message.
Use -proc:none to disable annotation processing.
[INFO]
[INFO] --- surefire:2.22.3:test (default-test) @ oscar4-tokenizer ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- jar:3.3.0:jar (default-jar) @ oscar4-tokenizer ---
[INFO] Building jar:
/<<PKGBUILDDIR>>/oscar4-tokeniser/target/oscar4-tokenizer-5.2.0.jar
[INFO]
[INFO] -----------< uk.ac.cam.ch.wwmm.oscar:oscar4-recogniser-core >-----------
[INFO] Building oscar4-recogniser-core 5.2.0 [6/13]
[INFO] from oscar4-recogniser-core/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for oscar4-parent 5.2.0:
[INFO]
[INFO] oscar4-parent ...................................... SUCCESS [ 0.193 s]
[INFO] oscar4-core ........................................ SUCCESS [ 1.939 s]
[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.532 s]
[INFO] oscar4-obo ......................................... SUCCESS [ 0.881 s]
[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.253 s]
[INFO] oscar4-recogniser-core ............................. FAILURE [ 0.013 s]
[INFO] oscar4-memmrecogniser .............................. SKIPPED
[INFO] oscar4-patternrecogniser ........................... SKIPPED
[INFO] oscar4-opsin ....................................... SKIPPED
[INFO] oscar4-api ......................................... SKIPPED
[INFO] oscar4-preprocessor ................................ SKIPPED
[INFO] oscar4-formatter ................................... SKIPPED
[INFO] oscar4-data ........................................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3.945 s
[INFO] Finished at: 2025-01-17T16:08:50Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project oscar4-recogniser-core: Could not
resolve dependencies for project
uk.ac.cam.ch.wwmm.oscar:oscar4-recogniser-core:jar:5.2.0
[ERROR] dependency: dk.brics.automaton:automaton:jar:debian (compile)
[ERROR] Cannot access central (https://repo.maven.apache.org/maven2) in
offline mode and the artifact dk.brics.automaton:automaton:jar:debian has not
been downloaded from it before.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <args> -rf :oscar4-recogniser-core
dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp
/usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven
-Dmaven.multiModuleProjectDirectory=/<<BUILDDIR>>/oscar4-5.2.0\+dfsg
-Dclassworlds.conf=/etc/maven/m2-debian.conf
org.codehaus.plexus.classworlds.launcher.Launcher
-s/etc/maven/settings-debian.xml
-Ddebian.dir=/<<BUILDDIR>>/oscar4-5.2.0\+dfsg/debian
-Dmaven.repo.local=/<<BUILDDIR>>/oscar4-5.2.0\+dfsg/debian/maven-repo
--batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US returned
exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202501/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:oscar4, so that this is still
visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: automaton
Source-Version: 1.12-4+dfsg-2
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
automaton, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated automaton package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 22 Jan 2025 02:42:26 -0500
Source: automaton
Architecture: source
Version: 1.12-4+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers
<[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1093582
Changes:
automaton (1.12-4+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Use upstream-provided pom.xml to keep the placement of maven coordinates
consistent (Closes: #1093582)
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Files:
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--- End Message ---
__
This is the maintainer address of Debian's Java team
<https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/pkg-java-maintainers>.
Please use
[email protected] for discussions and questions.
