Your message dated Mon, 14 Nov 2016 06:03:42 +0000
with message-id <e1c6amo-00083h...@fasolo.debian.org>
and subject line Bug#844020: fixed in gradle 3.1-1
has caused the Debian Bug report #844020,
regarding gradle 2.13 in unstable do not work with libnative-platform-java 0.11
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
844020: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844020
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: gradle
Version: 2.13-4
Severity: serious
Justification: Generate FTBFS in other packages (and in gradle itself)

  Hi,

I'm not an expert of java/gradle but I package several java programs (mainly
within the debian-med team).

I'm working on #843686. It took me time to understand that
net.rubygrapefruit.platform.PosixFiles.stat comes from the
libnative-platform-java package that is pulled by gradle itself.

I suspected that gradle was built with libnative-platform-java 0.10 and
does not work with libnative-platform-java 0.11.

So, I tried to do a local rebuild of gradle itself, so that it "links"
correctly with the new libnative-platform-java version.

=> it fails. So, currently, gradle FTBFS (as htsjdk), and for the same
reason (see the gradle build log in my up-to-date sid chroot at the
end of this report)

On my system, I downgraded libnative-platform-java to 0.10 (thanks to
snapshots.debian.org). With this, htsjdk can be built.


  So, I think that, with the current (2.13-4) gradle version:
- currently gradle FTBFS
- some gradle features do not work (I do not know gradle enought to
  be able to say which ones exactly) 
  that leads to FTBFS of different packages (at least htsjdk #843686
  and gradle itself)
- gradle should have been more strict wrt to libnative-platform-java
  dependency. I.e, instead of
  Depends: libnative-platform-java (>= 0.10)
  it should have had
  Depends: libnative-platform-java (>= 0.10), libnative-platform-java (<< 0.11)
  (or libnative-platform-java should have done a library transition rename
  as the new version is not compatible with the previous one
  => I will also open a bug for libnative-platform-java )


  I saw in the git that you are working to package the 3.1 version
of gradle. However, as this bug has annoying side effects, it would
be great if you can try to upload a new version of gradle compiled
with libnative-platform-java 0.11.
  The difficulty will be that you will need that, as gradle use itself
to compile, you will need libnative-platform-java 0.10 installed
in your environment... :-( I do not know enought of gradle and
libnative-platform-java to know how to workaround this.

  Of course, if gradle 3.1 is to be uploaded very soon, you can
ignore this bug.

  Regards,
    Vincent


Part of gradle 2.13-4 build log in current unstable:

[...]
gradle assemble startScripts javadocAll groovydocAll dslHtml samplesDocs -x 
:docs:releaseNotes -x :distributions:assemble --project-prop finalRelease=true 
--offline --stacktrace --gradle-user-home debian/.gradlehome --parallel 
--max-workers=1
Parallel execution is an incubating feature.
:buildSrc:clean UP-TO-DATE
:buildSrc:compileJava UP-TO-DATE
:buildSrc:compileGroovySLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in 
[jar:file:/usr/share/java/gradle-core.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in 
[jar:file:/usr/share/gradle/lib/gradle-core-2.13.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
SLF4J: Actual binding is of type 
[org.gradle.logging.internal.slf4j.OutputEventListenerBackedLoggerContext]
warning: Implicitly compiled files were not subject to annotation processing.
  Use -proc:none to disable annotation processing or -implicit to specify a 
policy for implicit compilation.
1 warning

:buildSrc:processResources
:buildSrc:classes
:buildSrc:jar
:buildSrc:assemble
:buildSrc:compileTestJava UP-TO-DATE
:buildSrc:compileTestGroovy
:buildSrc:processTestResources
:buildSrc:testClasses
:buildSrc:test FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':test'.
> net.rubygrapefruit.platform.PosixFiles.stat(Ljava/io/File;)Lnet/rubygrapefruit/platform/PosixFile;

* Try:
Run with --info or --debug option to get more log output.

* Exception is:
org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':test'.
        at 
org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:69)
        at 
org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:46)
        at 
org.gradle.api.internal.tasks.execution.PostExecutionAnalysisTaskExecuter.execute(PostExecutionAnalysisTaskExecuter.java:35)
        at 
org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:68)
        at 
org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:58)
        at 
org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:52)
        at 
org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52)
        at 
org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:53)
        at 
org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43)
        at 
org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:203)
        at 
org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:185)
        at 
org.gradle.execution.taskgraph.AbstractTaskPlanExecutor$TaskExecutorWorker.processTask(AbstractTaskPlanExecutor.java:66)
        at 
org.gradle.execution.taskgraph.AbstractTaskPlanExecutor$TaskExecutorWorker.run(AbstractTaskPlanExecutor.java:50)
        at 
org.gradle.execution.taskgraph.ParallelTaskPlanExecutor.process(ParallelTaskPlanExecutor.java:47)
        at 
org.gradle.execution.taskgraph.DefaultTaskGraphExecuter.execute(DefaultTaskGraphExecuter.java:110)
        at 
org.gradle.execution.SelectedTaskExecutionAction.execute(SelectedTaskExecutionAction.java:37)
        at 
org.gradle.execution.DefaultBuildExecuter.execute(DefaultBuildExecuter.java:37)
        at 
org.gradle.execution.DefaultBuildExecuter.access$000(DefaultBuildExecuter.java:23)
        at 
org.gradle.execution.DefaultBuildExecuter$1.proceed(DefaultBuildExecuter.java:43)
        at 
org.gradle.execution.DryRunBuildExecutionAction.execute(DryRunBuildExecutionAction.java:32)
        at 
org.gradle.execution.DefaultBuildExecuter.execute(DefaultBuildExecuter.java:37)
        at 
org.gradle.execution.DefaultBuildExecuter.execute(DefaultBuildExecuter.java:30)
        at 
org.gradle.initialization.DefaultGradleLauncher$4.run(DefaultGradleLauncher.java:154)
        at org.gradle.internal.Factories$1.create(Factories.java:22)
        at 
org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:90)
        at 
org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:52)
        at 
org.gradle.initialization.DefaultGradleLauncher.doBuildStages(DefaultGradleLauncher.java:151)
        at 
org.gradle.initialization.DefaultGradleLauncher.access$200(DefaultGradleLauncher.java:32)
        at 
org.gradle.initialization.DefaultGradleLauncher$1.create(DefaultGradleLauncher.java:99)
        at 
org.gradle.initialization.DefaultGradleLauncher$1.create(DefaultGradleLauncher.java:93)
        at 
org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:90)
        at 
org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:62)
        at 
org.gradle.initialization.DefaultGradleLauncher.doBuild(DefaultGradleLauncher.java:93)
        at 
org.gradle.initialization.DefaultGradleLauncher.run(DefaultGradleLauncher.java:82)
        at 
org.gradle.initialization.buildsrc.BuildSrcUpdateFactory.create(BuildSrcUpdateFactory.java:49)
        at 
org.gradle.initialization.buildsrc.BuildSrcUpdateFactory.create(BuildSrcUpdateFactory.java:31)
        at 
org.gradle.cache.internal.DefaultCacheAccess.useCache(DefaultCacheAccess.java:192)
        at 
org.gradle.cache.internal.DefaultPersistentDirectoryStore.useCache(DefaultPersistentDirectoryStore.java:102)
        at 
org.gradle.cache.internal.DefaultCacheFactory$ReferenceTrackingCache.useCache(DefaultCacheFactory.java:183)
        at 
org.gradle.initialization.buildsrc.BuildSourceBuilder.buildBuildSrc(BuildSourceBuilder.java:86)
        at 
org.gradle.initialization.buildsrc.BuildSourceBuilder.access$000(BuildSourceBuilder.java:40)
        at 
org.gradle.initialization.buildsrc.BuildSourceBuilder$1.create(BuildSourceBuilder.java:74)
        at 
org.gradle.initialization.buildsrc.BuildSourceBuilder$1.create(BuildSourceBuilder.java:71)
        at 
org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:90)
        at 
org.gradle.initialization.buildsrc.BuildSourceBuilder.createBuildSourceClasspath(BuildSourceBuilder.java:71)
        at 
org.gradle.initialization.buildsrc.BuildSourceBuilder.buildAndCreateClassLoader(BuildSourceBuilder.java:56)
        at 
org.gradle.initialization.SettingsHandler.findSettingsAndLoadIfAppropriate(SettingsHandler.java:88)
        at 
org.gradle.initialization.SettingsHandler.findAndLoadSettings(SettingsHandler.java:47)
        at 
org.gradle.initialization.NotifyingSettingsLoader.findAndLoadSettings(NotifyingSettingsLoader.java:33)
        at 
org.gradle.initialization.DefaultGradleLauncher.doBuildStages(DefaultGradleLauncher.java:119)
        at 
org.gradle.initialization.DefaultGradleLauncher.access$200(DefaultGradleLauncher.java:32)
        at 
org.gradle.initialization.DefaultGradleLauncher$1.create(DefaultGradleLauncher.java:99)
        at 
org.gradle.initialization.DefaultGradleLauncher$1.create(DefaultGradleLauncher.java:93)
        at 
org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:90)
        at 
org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:62)
        at 
org.gradle.initialization.DefaultGradleLauncher.doBuild(DefaultGradleLauncher.java:93)
        at 
org.gradle.initialization.DefaultGradleLauncher.run(DefaultGradleLauncher.java:82)
        at 
org.gradle.launcher.exec.InProcessBuildActionExecuter$DefaultBuildController.run(InProcessBuildActionExecuter.java:94)
        at 
org.gradle.tooling.internal.provider.ExecuteBuildActionRunner.run(ExecuteBuildActionRunner.java:28)
        at 
org.gradle.launcher.exec.ChainingBuildActionRunner.run(ChainingBuildActionRunner.java:35)
        at 
org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:43)
        at 
org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:28)
        at 
org.gradle.launcher.exec.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:81)
        at 
org.gradle.launcher.exec.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:46)
        at 
org.gradle.launcher.exec.DaemonUsageSuggestingBuildActionExecuter.execute(DaemonUsageSuggestingBuildActionExecuter.java:51)
        at 
org.gradle.launcher.exec.DaemonUsageSuggestingBuildActionExecuter.execute(DaemonUsageSuggestingBuildActionExecuter.java:28)
        at org.gradle.launcher.cli.RunBuildAction.run(RunBuildAction.java:43)
        at 
org.gradle.internal.Actions$RunnableActionAdapter.execute(Actions.java:173)
        at 
org.gradle.launcher.cli.CommandLineActionFactory$ParseAndBuildAction.execute(CommandLineActionFactory.java:241)
        at 
org.gradle.launcher.cli.CommandLineActionFactory$ParseAndBuildAction.execute(CommandLineActionFactory.java:214)
        at 
org.gradle.launcher.cli.JavaRuntimeValidationAction.execute(JavaRuntimeValidationAction.java:35)
        at 
org.gradle.launcher.cli.JavaRuntimeValidationAction.execute(JavaRuntimeValidationAction.java:24)
        at 
org.gradle.launcher.cli.CommandLineActionFactory$WithLogging.execute(CommandLineActionFactory.java:207)
        at 
org.gradle.launcher.cli.CommandLineActionFactory$WithLogging.execute(CommandLineActionFactory.java:169)
        at 
org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:33)
        at 
org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:22)
        at org.gradle.launcher.Main.doAction(Main.java:33)
        at org.gradle.launcher.bootstrap.EntryPoint.run(EntryPoint.java:45)
        at 
org.gradle.launcher.bootstrap.ProcessBootstrap.runNoExit(ProcessBootstrap.java:55)
        at 
org.gradle.launcher.bootstrap.ProcessBootstrap.run(ProcessBootstrap.java:36)
        at org.gradle.launcher.GradleMain.main(GradleMain.java:23)
Caused by: java.lang.NoSuchMethodError: 
net.rubygrapefruit.platform.PosixFiles.stat(Ljava/io/File;)Lnet/rubygrapefruit/platform/PosixFile;
        at 
org.gradle.internal.nativeintegration.filesystem.services.NativePlatformBackedSymlink.isSymlink(NativePlatformBackedSymlink.java:46)
        at 
org.gradle.internal.nativeintegration.filesystem.services.GenericFileSystem.isSymlink(GenericFileSystem.java:64)
        at 
org.gradle.api.internal.file.delete.Deleter.doDeleteInternal(Deleter.java:72)
        at org.gradle.api.internal.file.delete.Deleter.delete(Deleter.java:66)
        at org.gradle.api.internal.file.delete.Deleter.delete(Deleter.java:47)
        at 
org.gradle.api.internal.file.DefaultFileOperations.delete(DefaultFileOperations.java:137)
        at 
org.gradle.api.internal.project.AbstractProject.delete(AbstractProject.java:709)
        at org.gradle.api.tasks.testing.Test.executeTests(Test.java:552)
        at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:75)
        at 
org.gradle.api.internal.project.taskfactory.AnnotationProcessingTaskFactory$StandardTaskAction.doExecute(AnnotationProcessingTaskFactory.java:228)
        at 
org.gradle.api.internal.project.taskfactory.AnnotationProcessingTaskFactory$StandardTaskAction.execute(AnnotationProcessingTaskFactory.java:221)
        at 
org.gradle.api.internal.project.taskfactory.AnnotationProcessingTaskFactory$StandardTaskAction.execute(AnnotationProcessingTaskFactory.java:210)
        at 
org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:585)
        at 
org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:568)
        at 
org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:80)
        at 
org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:61)
        ... 80 more


BUILD FAILED
[...]


-- System Information:
Debian Release: stretch/sid
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'unstable'), (500, 'testing'), 
(200, 'stable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386, armel, mipsel

Kernel: Linux 4.8.0-1-amd64 (SMP w/8 CPU cores)
Locale: LANG=fr_FR.utf8, LC_CTYPE=fr_FR.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages gradle depends on:
ii  default-jre-headless [java7-runtime-headless]    2:1.8-57
ii  libgradle-core-java                              2.13-4
ii  libgradle-plugins-java                           2.13-4
ii  openjdk-8-jre-headless [java7-runtime-headless]  8u111-b14-3

gradle recommends no packages.

Versions of packages gradle suggests:
ii  default-jre  2:1.8-57

-- no debconf information

--- End Message ---
--- Begin Message ---
Source: gradle
Source-Version: 3.1-1

We believe that the bug you reported is fixed in the latest version of
gradle, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 844...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Kai-Chung Yan <seamli...@gmail.com> (supplier of updated gradle package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 14 Nov 2016 13:34:34 +0800
Source: gradle
Binary: gradle libgradle-core-java libgradle-plugins-java gradle-doc
Architecture: source
Version: 3.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Java Maintainers 
<pkg-java-maintainers@lists.alioth.debian.org>
Changed-By: Kai-Chung Yan <seamli...@gmail.com>
Description:
 gradle     - Powerful build system for the JVM
 gradle-doc - Powerful build system for the JVM - Documentations
 libgradle-core-java - Powerful build system for the JVM - Core libraries
 libgradle-plugins-java - Powerful build system for the JVM - All plugins
Closes: 843211 844020
Changes:
 gradle (3.1-1) unstable; urgency=medium
 .
   * New upstream release (Closes: #844020)
   * Rename javadoc directory: /usr/share/doc/gradle/{javadoc => api}
   * Update to debhelper 10
   * d/gradle.desktop: Improve zh-TW translation
   * Move gradle-wrapper.jar from libgradle-core-java to libgradle-plugins-java
   * gradle-doc: Install DSL documentations and release notes
   * Use javahelper to install Javadoc
   * No longer embed Class-Path in JAR manifests since Gradle uses its own class
     loading mechanism, otherwise 2 sets of the same JARs will be loaded
   * d/gradle-doc.lintian-overrides: Override duplicate-files since they are
     example files not mistakes and the warnings are annoying
   * Drop/new patches:
     - disable_tests.diff: Now use a cleaner way to bypass tests
     - disable_sonar.diff: Upstream dropped the sonar plugin
     + drop_http-builder.patch: http-builder is not in Debian yet
     + new_APIs_in_3.0.patch
     + disable_Kotlin.patch
     + disable_buildSrc_tests.patch
     + dependency-management_depends_on_testkit.patch: Otherwise ZIP I/O errors
     + Groovy_projects_depends_on_localGroovy.patch: Otherwise errors
     + remove_timestamps.patch: Improve reproducibility by manually setting
       timestamps and other dynamic properties
     + drop_jmh-gradle-plugin.patch: jmh-gradle-plugin is not in Debian yet
   * New JARs:
     * gradle-composite-builds.jar
     * gradle-ide-play.jar
     * gradle-installation-beacon.jar
     * gradle-jvm-services.jar
     * gradle-logging.jar
     * gradle-process-services.jar
     * gradle-task-cache-http.jar
   * d/control:
     * Build-Depends on libfindbugs instead of findbugs
     * Restrict dependencies:
       * groovy >= 2.4.7
       * gradle >= 2.13
       * libnative-platform-java >= 0.11
     * gradle now Suggests gradle-doc (Closes: #843211)
Checksums-Sha1:
 eeeec9c183b95dcc3f6a632f6ccc945377db7ac1 3365 gradle_3.1-1.dsc
 329304d56a069677635b9fd3a09ec5cab25eb9a1 5220996 gradle_3.1.orig.tar.xz
 cc6bb155d176d92ade116e54ab979bddc3cb6f58 37432 gradle_3.1-1.debian.tar.xz
Checksums-Sha256:
 6c90d5596df81165158976ca30e198c544c4612910ee7408ce12270bef4d794b 3365 
gradle_3.1-1.dsc
 82cb31378205c88cdff21760766ecc75d55303c0cd44323f60e3499f9565c166 5220996 
gradle_3.1.orig.tar.xz
 cb3f0156c9269da84d59ec2c2651c83e81963c08bef6328161d92bbbb32645e4 37432 
gradle_3.1-1.debian.tar.xz
Files:
 88d07f7a17fbeec5c93ed5ee0f8f76da 3365 java optional gradle_3.1-1.dsc
 aaafbb10b846da27a311a2ea991f57cd 5220996 java optional gradle_3.1.orig.tar.xz
 3367470f5da2e700a05b3175423730c5 37432 java optional gradle_3.1-1.debian.tar.xz

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