It looks like jalview was broken by the switch from jmol 12.2 to 14.6 in December. There is a new version in the Git repository (2.10) but it doesn't build yet.
Emmanuel Bourg __ This is the maintainer address of Debian's Java team <http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-java-maintainers>. Please use [email protected] for discussions and questions.

