commit 76d63a1ce6792be53062ebc6cc2d66a6b05ceab1
Author: Jan Rękorajski <[email protected]>
Date: Fri May 10 12:33:11 2013 +0200
- new
R-edgeR.spec | 55 +++++++++++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 55 insertions(+)
---
diff --git a/R-edgeR.spec b/R-edgeR.spec
new file mode 100644
index 0000000..4845f06
--- /dev/null
+++ b/R-edgeR.spec
@@ -0,0 +1,55 @@
+%define packname edgeR
+
+Summary: Empirical analysis of digital gene expression data in R
+Name: R-%{packname}
+Version: 3.2.3
+Release: 1
+License: LGPL
+Group: Applications/Engineering
+Source0:
http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+# Source0-md5: fdf9457b51e457743bc9171b8026afc0
+URL:
http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
+BuildRequires: R-limma
+BuildRequires: R
+BuildRequires: texlive-latex
+Requires: R-limma
+Requires: R
+BuildRoot: %{tmpdir}/%{name}-%{version}-root-%(id -u -n)
+
+%description
+Differential expression analysis of RNA-seq and digital gene
+expression profiles with biological replication. Uses empirical Bayes
+estimation and exact tests based on the negative binomial
+distribution. Also useful for differential signal analysis with other
+types of genome-scale count data.
+
+%prep
+%setup -q -c -n %{packname}
+
+%build
+
+%install
+rm -rf $RPM_BUILD_ROOT
+install -d $RPM_BUILD_ROOT%{_libdir}/R/library
+
+R CMD INSTALL %{packname} -l $RPM_BUILD_ROOT%{_libdir}/R/library
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%files
+%defattr(644,root,root,755)
+%dir %{_libdir}/R/library/%{packname}/
+%doc %{_libdir}/R/library/%{packname}/CITATION
+%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS.Rd
+%doc %{_libdir}/R/library/%{packname}/html
+%doc %{_libdir}/R/library/%{packname}/doc
+%{_libdir}/R/library/%{packname}/INDEX
+%{_libdir}/R/library/%{packname}/Meta/
+%{_libdir}/R/library/%{packname}/NAMESPACE
+%{_libdir}/R/library/%{packname}/R/
+%{_libdir}/R/library/%{packname}/help/
+%{_libdir}/R/library/%{packname}/data
+%dir %{_libdir}/R/library/%{packname}/libs
+%attr(755,root,root) %{_libdir}/R/library/%{packname}/libs/edgeR.so
================================================================
---- gitweb:
http://git.pld-linux.org/gitweb.cgi/packages/R-edgeR.git/commitdiff/76d63a1ce6792be53062ebc6cc2d66a6b05ceab1
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